RnoINT0024214 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70297467-70298659:+
Coord C1 exon
chr7:70297467-70297663
Coord A exon
chr7:70297664-70298550
Coord C2 exon
chr7:70298551-70298659
Length
887 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
AACTATCAATATCCCCGCAGCTA
3' ss Score
6.68
Exon sequences
Seq C1 exon
ACCCGGAGAGTGGGCAGCCTTCTCTCCCAAAACATCCACTTTTGGATCGGGAAGGACTCCTCCCAAGATGAGCAGAGCTGTGCAGCCATCTATACCACACAGCTGGATGACTACCTGGGAGGCAGCCCCGTGCAGCACCGTGAGGTCCAGTACCATGAGTCTGACACCTTCCGTGGCTACTTCAAGCGGGGCATCAT
Seq A exon
GTGAGTAGCTATGTACAGAGCACAGGCAGATACAACAGTGTCCAGGAATGGAGACTAAAGGGTCAATGTGCCTTTGAAGTAACCTGAGAGATGCAAAGCAAAGCAAAACAACCACCTTAACCCAAGAGCAAATCAGAGCAGGGTGGGGCTGAGCGCTGGGCAGGCTGAGAGGAGCCATAGGAGGGGGAAGGGTCAGCACTACGTTCTGGAGTGCACTGGGACTATTCATTGTGAATCCCATCTCTCAGGACAACCCCTCACACACCCAGGCCTGTAAGGACCCATGATCCAGAGTGTTCCCAACTGTGCATTAGTGGTGGGAGGGGTCTGTGATCAATGTAGGTGTCTGTCACAGAAAGGTGTGTCCAGAGCAAGCCTCGCCTAGCACACATGAACAAAGACACAAACAGGGTCTACGACAGAATGACAGCCTCTGTTTATGGAAGTGGTGGAAGGGGTGACAGGACACACTTTACTGGAATGAAGGAGGGACCTTAGATTGCCAGAACAAGCTGAGGCAGGGAGAGGCCTGGGAGGTCACATGCAGGCGCTCAGTGCGTAGACACGTAACCTGAGGGCCATGGCAGCCACCTCTAATCCCAACCAATGAGGTTCCCTCTGCCTGCAGCACTACTTTTCTTGTCTGTGGGACTTCTCATCATAATATCTCAGCTCAAACGTCCCTTCAGGAGAGCCTGACCCGGCCACTCGTCACAGACCTAGCCTTGGGGCAGCAGGCGCAGTTTCTGTGTATGTTGCTCATTTACTATGAGTGACGTGGACAGAAGCTGATGTCTCTATGTTACTACTATAATTAATTCTCAGCAGTCTTCCCAGAACCTAGCTTGTAGCAGGCTCAGGACAAATAACTATCAATATCCCCGCAG
Seq C2 exon
CTATAAAAAGGGGGGTGTGGCCTCTGGGATGAAGCATGTGGAGACCAACACCTATGATGTGAAGAGGCTGTTACATGTGAAGGGGAAAAGAAACATCAGAGCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAGTGGGCAGCCTTC
R:
TCAGTGGCTCTGATGTTTCTT
Band lengths:
302-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]