GgaINT1029669 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22036833-22037532:-
Coord C1 exon
chr7:22037336-22037532
Coord A exon
chr7:22036942-22037335
Coord C2 exon
chr7:22036833-22036941
Length
394 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CCATATCCATGTCCTCTCAGCTA
3' ss Score
5.83
Exon sequences
Seq C1 exon
ACACGTAAGACTGGGAGCGGCTTCAGCTACAACATCCACTACTGGCTGGGTAAGAACTCGAGCCAGGACGAGCAGGGGGCGGCCGCCATCTACACCACGCAGATGGATGAGTATCTGGGCTCTGTGGCCGTGCAGCACCGTGAGGTCCAGGGCCATGAGAGCGAGACATTCCGTGCATACTTCAAGCAGGGACTCAT
Seq A exon
GTAAGTTGCCAACATGGGCGCCCTGTTGCTTGCCATGGCTATGCTTCCTGCCTTGCCAGAAGGGAAGGGAATGGGAAGGGAATGGCATTGGGAAGGCAATCCTCTGCATCAAGATAAAGGTAGATGTCACATTGAGTGACATGGTTTTGTGGTATGGAGGGGATGGGTTGATGGTTCGATCAAATGATCTTAGAGGTCTTTCCAACCTTAATGATTTTATGACCCCATGGGAACAACTCTACTCTGGGGAGGTGGGATGTTGGCCTGGATTCCATCTTACAGTGTCTATTACTTGTACCAGTGGGTAGTGGTTTCCAGGCATATGGGCAGGAGAAGATCCTTGCTGGAGTGGGAAGGGTGGCCCAAGGCTTATGCCATATCCATGTCCTCTCAG
Seq C2 exon
CTATAAGCAGGGTGGGGTGGCCTCAGGCATGAAGCACGTGGAGACCAACACCTACAACGTCCAGCGCCTGCTGCATGTGAAGGGCAAGAAGAACGTGGTGGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTAAGACTGGGAGCGG
R:
GCAGCCACCACGTTCTTCTT
Band lengths:
302-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]