GgaINT0047488 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24091580-24091922:-
Coord C1 exon
chr7:24091824-24091922
Coord A exon
chr7:24091734-24091823
Coord C2 exon
chr7:24091580-24091733
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGGATCTGGCTCCCCTCAGGGC
3' ss Score
8.15
Exon sequences
Seq C1 exon
GACTGCTACATCCTTGATCAAGCAGGTCTCAAGATCTTTGTGTGGAAGGGCAAGAATGCCAACAAGGAGGAGAAGCAGCAGGCAATGAGCAGGGCCCTG
Seq A exon
GTGAGTGCTCGGGGTGGTGGTTTGGGGTTTGTTGTTCCCTAGGAGAGGCTGGGTACTCCATGTCCCGGTACTGGATCTGGCTCCCCTCAG
Seq C2 exon
GGCTTCATCAAAGCCAAGAACTACCCGGCCAGCACCAGCGTGGAGACAGAGAACGATGGGTCTGAGTCCGCTGTCTTCAGGCAGCTCTTCCAAAAATGGACTGTTCCCAACCAAACCAGTGGGCTGGGCAAGACCCATACTGTGGGCAAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAACAAGGAGGAGAAGC
R:
CCCACTGGTTTGGTTGGGAAC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]