MmuINT0172934 @ mm9
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74468353-74469654:+
Coord C1 exon
chr1:74468353-74468451
Coord A exon
chr1:74468452-74469500
Coord C2 exon
chr1:74469501-74469654
Length
1049 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGACCCCCTCCTTTCCCCAGAAC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAACGCTCAGGAGAGGAGCGGAGCCATGAGCCAGGCCTTG
Seq A exon
GTAAGGAAGGGGTCAGGCACAGCAGTTCTCCACCTTCCTAATGCTGCGGCACTTCCATACAGTTCATCTTGTGGTGACCCCCAGTCATAACATTATTTTCATTGCTACTTCATAACTATAATTTTGTTACTGTCATGAATCGTAATATAGATATCTAATATGCGGGATATCTGATATGTGACCCCAACAGGGTTGTGACCCTCAGGTTGAGAACAGCTGATCTAGCAGCAGCAGCAGCAGCAGAAAGGGATTCAGGGAGTTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAACTCCCAGCAACCACATGGTGCCTCAAAACCATTTGTAATGGGATCTAATGCCCTCTGCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATAAACATTAAAAAAAAAAAAAAAAGGGAGGGAGGGAGGAAGGAAGGCAGGCAGGCATTCAGGCCATAGCACCAGGAAGAGTCTAAGGACTATCTATTCTGGGAGGTCAGGGCTAGGGGCAAATGGACACAGTTGCTGGGGGCTGAGGAACATAGTGTCACCAGCTTCCTGGCTCTCAGCATGTGAGTGAGCTGACAATTAGACAAACCTAGGCCTCCTCAGGATATTGGGTGTCACTCCCCCCTGCAAGAGCTTTGTTTAAGGGAATGGCTCGTCTTCCTCCAAAAAGACTGAGCAGGCTTGATGGCCAGGCCTCAGGTCTGGAGTCAGGTCAGTCAGTTGGGTTGGAATGGGTGTTAGAATCGAATTGGGGTATAGTTCAGGTAGGGGTCAGATTTGTTGGTATCAGGGTCAGCATTCAGGGTTGAGGTTGGAGTTTGAGACACTATAAGGTTTGATCTTGATTGAAGAGGGTTAGTGTGGTTAAGTTTGGGGTCCGCTTTGGGCTTGGAGCTGGGCGTGTTCAGGATTGAGGCTAAGTGGATCTGGTTGGGGTCAGGACCAGGCTTTGGCTTGCAGGGGGTATGGAGATCTAGGGACAAGAGGCAGTAGTCGCCAGTGACCCCCTCCTTTCCCCAG
Seq C2 exon
AACTTCATCAAAGCCAAGCAGTACCCACCGAGCACGCAGGTTGAGGTGCAGAATGACGGGGCCGAGTCCCCCATCTTCCAACAACTCTTCCAGAAGTGGACAGTGCCCAACCGGACCTCAGGCCTCGGCAAAACCCACACTGTGGGCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-Vil1:NM_009509:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTACATCCTGGACCAG
R:
CCACAGAGCCCACAGTGTG
Band lengths:
253-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: