RnoINT0162870 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81701765-81702927:+
Coord C1 exon
chr9:81701765-81701863
Coord A exon
chr9:81701864-81702773
Coord C2 exon
chr9:81702774-81702927
Length
910 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGACCCTCTTCTTTTCCCAGAAC
3' ss Score
10.1
Exon sequences
Seq C1 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAATGCCCAGGAGAGGAGCGGAGCCATGAACCAGGCTTTG
Seq A exon
GTAAGGAAAGGGTCTAGCATAACGGTTCTCCACCTTCCTAACTATGCGACCCTTTTATATCGTTGCTTATGTTGTGGTGCTCCCTCCAACCATAACATTATTTTCGTTGCTACTTCATAACTGTAATTTTGCTACTATTATGAATCGAATAAATATCTGATATGCAGGATATCTGATATGCGACCTCAACAGGGTTGGGACCCTCAGGTTGAGAACAGCTGATCTAGCACAGCAGAAGGGGATTCAGACCAGGCCATAGCACCAGGCAGAGTCCAAGGAATATTCTGGGAGGTCAGAAATGGGAGCAAATGGACACAGCTTTTGGGGGCCGAGGACCATAATGTCACCAGCTTCCTGTTCTCACATGTTCTCAGCATGTGAGTGAACTGACCACCAGCCAAATCTAGGCCTTCACGATATTGGGTGTCACTTCCCCATGCAAGAGCTTTGCTTAGAGAAGGGAATGGCTAGTCTTCCTCCAAAAAGGCAGTAGGCTTGATGCCAGGGCTCGGCTCTGGAGTCAGTGTTGGTTTAGAATGGGTACTAGAATAGAATTGAGCTAGCGTTTAGGAAGGAGTCAGATCTGGTAGGCTCCAAGTTAGGTCTAGGGTCAGGATTCAGGGTTGAGATTAGAGTTTGAGACATTATCAGGTTTGACCTTGATTGAAGAGGGTTAGCATGGTTAAGTTTAGGCTCCGCTTTGGGATTGGAGCTAGGCATGTTCAGGATTGATGCTAGGTGGATTTGGTTGGGGTCGGGCCAGGCTTTGGCTTGCGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGACGCACACACACAGATTTAGGGACAGGAGGTAGTAGTCTCCAATGACCCTCTTCTTTTCCCAG
Seq C2 exon
AACTTCATCAAAGCCAAGCAGTACCCACCTAGCACGCAGGTTGAGGTGCAGAATGATGGGGCTGAGTCCGCCATTTTCCAGCAGCTCTTCCAGAAGTGGACAGTGCCCAATCGGACCTCAGGCCTTGGCAAAACCCACACAGTGGGCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTACATCCTGGACCAG
R:
CACTGTGTGGGTTTTGCCAAG
Band lengths:
243-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]