GgaINT0047729 @ galGal4
Intron Retention
Gene
ENSGALG00000009293 | CHN1
Description
N-chimaerin [Source:RefSeq peptide;Acc:NP_001012970]
Coordinates
chr7:16243264-16244513:+
Coord C1 exon
chr7:16243264-16243295
Coord A exon
chr7:16243296-16244399
Coord C2 exon
chr7:16244400-16244513
Length
1104 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AAAATGCTTTTGTTCCTTAGATT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTAGAGAACCGTCCCAAATATTATGGAAGAGA
Seq A exon
GTAAGTAACATGCGTCTCAGCGTGCATTTATTTCCATGATGTGTTGGTTGATAACCTTTACAGGAAAGCCTGAAAGCGTTTGCAGTGGGCACTGTTTTTCAGCATGGTTTGCACGGAAGCATAAAGGCTTGGACATGCCATTGTGCCCTTCATAGGCAGCTTTCCCTTGCAGCAGGTGACTTTGCAGTGCTTTGCTCCAGCATCTGCCTAGCTGTCTCTGTGCAAGACCTTGGTGAGGTCGAAAGTTGCATTTTGGTGTCCATATCATCAGCAGCCACTGCATTTGCACCTCAGCCCTGTTGCTTCTGCCAGGCTGTTCATTTCACTTTTGCAGTGAGAGCTTTTGCTCCATTTCCTTGCAGCATGTCTTGCTCACCATTGCATTATTATTGCAGTACCACCATTTTTGTCTACCAAAATTACAGCTGCTATTTCTGATGGCTGTAGATGTTATTGAGTGGTAACTTACTTGAGAAAGCCATATATTTCTGCACTTTCAGGGAGTTGTCTCTTTTTTACTCTGCTCTTCAACTGGCTTTTGTGAAAGATGTTTGCATGCAGGAAAAAGATTTGAAACGCAAATATAACATAGATGGATATCTTATATATTTATTTGTTTTCAGACTGATAAGGCAAAGATGGTTAGATCTAGCGTGGGGGAAGGAAAACAGATCTGATTTGTGTATATTTGGGTAAAAAATGCCTAGCTCAATACTTAAACCAGTGGTTACTAAGACTGTGCCATCCCCAGGATTTTAGCAAGTTGCTGCAGTATCCCTGAATGTTGCCAGATGCTGGATCACATGCCTCTGGCACGAAGCATCTCAAGCCAGGAGGAGAAAAGGGGCTCTTTGCTACGTATTAAATTGATGGCTGCCAATTATAAAAGTAGTATGCTTGTTTCATAGATAAGGAGAAGCCTTCCCAAACCATTTAAAGCGATTTGAAAAACAGCCAGAAAGGAGATAAATTAAAGATGTAGGTTCCTGCAAAACAATCATTTTTATGTTACTTTCTTTTTCAAATACCATGGCTGGTGTTTTTTGAAGAGGAGGTGATTTAGAAGCGAAAAAGCATGTGTTTCAAAATGCTTTTGTTCCTTAG
Seq C2 exon
ATTTCATGGCATGATCTCAAGGGAAGAAGCTGACCAGTTATTAAGTGTTGCAGAGGGAAGCTATCTCATTCGTGAAAGCCAAAGGCAGCCTGGAACCTACACTTTGGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293:ENSGALT00000042646:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(53.5=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]