MmuINT1007145 @ mm10
Intron Retention
Gene
ENSMUSG00000056486 | Chn1
Description
chimerin 1 [Source:MGI Symbol;Acc:MGI:1915674]
Coordinates
chr2:73706919-73710486:-
Coord C1 exon
chr2:73710455-73710486
Coord A exon
chr2:73707033-73710454
Coord C2 exon
chr2:73706919-73707032
Length
3422 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GAACTGGCTTTGTTCTGTAGGTA
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTAGAAAACAGACCAAAGTATTATGGAAGAGA
Seq A exon
GTAAGTATGGATTATCAGAAAGTATCTCATAGATTGTCATATGTAAAAGATACAAATAAATGCATGGTTTTGGTAAAAACACAGGATGAGATAAATATTCTAGTTTGGTGGAATTGAATTCTCTTTCTTTGATTACAGGTGTAATCCTGACTAGTCTAAATAGGAAAATACAGACAAGTATAAAAAGAAAGTACCTTGATAAACAAATGTGCAATAATGCTAAAGAAGCAAGCCATATAGATACATACTCCTAGATGGATCTCAAGAAAGTGTTTATAGTTATGTACTAAATGCAATAAAACATATCTATAGACTCAGTGGGTATGGACACTTTATTTTATATTGCCCCCCTTTCTAGTTTTCTATATTGTGTAGTATCAGCCCAGAAAAGAAGTGATTTGTGTTATTCAGAGACATGTCAAAATTTTTATATACTACCTTCTGAAGATGTTTTCCTAATGTTATTTTATTTTTTAATGTACATTGGTGTTTTGCCTGCATGTATATCTGTGTGAGGGTGTCAGATCACCTGGAAGTGGAATTATAAGCTGTCATATTGGTGTTTGGAATTGAACCCAGGTCCTCTGAAAGAGCAGCTCTTAACCACTAAGCCATCTCTCTAGCACCCTTCCTAACATAATTATTTAAAGCAGTGGATCACTATGAAGGCCAGCTTCCTTTTGTGTAAAATTATAGGCATGTGCCAATGCATCAGTCCCCTCTCAGGCTTTACAAACATCTTGTCCATACAAACTTGTAGTTTGAGTTTTCCACTTAATGTTGATAATGAGCATTATAATATTTTTTTTTAAATTGCCTTTTGGTTTTAGTTCTACAGTTGGGCAACAAACTATACCAAAAATTATTCCAAATGTTGTTTTAGTGTTTAAGGTCTTAACTTTTCTGATTATTGAGAATAGAAATATAGCACTTTGAAGAAAAGAATAAAAATCTATATAAAAGAATATAGTCCATCTCACTCCCCAGATAAAAACTTTTGTTTTTCATTGGGATAATATCAGATAACAATGTATATAGCAAATATTTCTAAATTACTTAAAATTCCAGCCATGGGCCAGGTGGTGGTGGCACACACCTTTAATTTCAGCACTCAGGAGGCAGAGGCAGGAGGGTCCCTGTGATTTCAAGGCTATCCTGATTTACAGAACAAATTCCAGGACAGCCAGAAGACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAAACAGGACAGCCAGAAGACCTAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACATACAGACAGATGAACGACTGACTAACAGATGGACAGACAGACAGACACACAGTGTGTGTGTGTGTGTGTGTTTTTTAGTCGTGTGAATGTCCGTAGGCAGTGTACCTGTGGGTTGAGGTAAGAAGACTGCATAGCTGAGGACCAGTGACCTTAAGGGTTCTTCAGTTGACCTTCTGATTGAGGCTCTCAGCAGGAATGCTGGCCACAGAAGTGTATCTGATTTTAGACTGGAGATTTATAGATTAGGAGGCTTAATCTCTAACGCTAATAGTTATTTTGAGAAGCCTCTTATTGTACAATTTTAAAGGGATACAATTATTGGATCAATTGGTATGAATCATTTTAAGGGTCTTTAAATTTCATTGTCAGAGTGTCTTTCAAAATTTGAGTTTTATTGCTTTAAGATGATTGGTCTTTATTTTAAACAGCTAGCACATTTTGCCAAGTTTATTCACTGATGGCACATATAGTAATCTAATGAGGGTGTCACATCAAGGGTGGGTTACAATTTTGCTTGCACCAGATTCAGTGTATTGCCCGTGGACCTCGTTCTAAACAATTAAGAAATTCATAGAAATGAAAAATTCAGGAGACCAACTAGAGCATTTCTGATTGATGTGATTTAAACATTATTGCCATGCACAATTTTAAGACTGTTCAGAGACTGGGCCATACCTACAAGGAAAAACTTCAGAGAGTTACCAGTTATTCCAAGCAAAATTCCTGGGTTATTAAGGTACCAATAAAGGGCCTTTAAAATGTATTACAAAGTCAAGTGACTATTGTCCTTTTGCACTGTGGGAGCCACAAGCAGTGCTTCTTTTAAGTAGTGAGGCAGCAGTGATGAGAGAGACTATCTCCATGCTCTTCTGTGATCTCTGAGCCTTTGAGATAAATTGAACAGACAGATCACAGCATGGTTGATGTAGTGCAAACAAGGGCATCACAGGAGAAGTAGTATCTACCCAGTGAATTGTCTGAGTTTGTATATTAATATTTTATTATTTATTTACTTTTTAGTAATTTAAAATGCCCTTAGGAACATTGTGGGACAGTTAGGGGAGAAGTGATTTTTAGGAAATATGATTTGTCCCTTAGGAGAGTGAATGGGAGATAAGCTAGTTTGTAGTAAGATTTGTGTGGTGTGATATCACCTTAAATCTCCTCTTTAGGGGAAACTCTGTCTCCCTGGGAAGGAGTTTGCTGGGACTTTGCTCCTTTTGGATGGTTTGTCTTTATGTAGAGAAGGAAGCTCAGAGAAAGATGTGCTGTCAGGTGAGATAACACACTGAAGCAGCACATTCCACATGGCAGGGCCCATAGTCCTTGGCGGTCTTTGAGTTCCTAAAAGGATTTAGTGTGTGAGTTTACAAATTGCAAATCATCATACAGGTCTGAATGATTCCATGTTTTAGATATTTGCCACCACTGCTATTTTTATTTTCTTAGTGTTTTATATCAGGGTGTTGTAAATGAATCTTTGCATAAAGGATTTATCTATTATTTGTGTTTATTCTTCCTTCTTTCCTTTGTTAATGAAAGATAGATTTGGGCAGGAAGTGAAGGCAAGTGCTGCCCCGTTTGCTTGTGGTCTGAATATTGAATGATGCGCATCATGCACATCACTGGCTGACCATGATAATCTAAAGACCCAGGGCCCTGGGAAGTTGCCAGCATGGACTTCCAGCTAGAAGTTTGGACCACAGCACCAACTGCGAAGAAGAAATGAGATACATTTCTGTATAGTATTCTTTAGCAAGCCTATATGGTCACATGGCCACATGAGAAAGGCCACATGGGTAAGGTGGAGGGTTCTGCCTCAGATGGATGTGGATTTTGCTTCTGGGCTGGGAACTAGACTCAGTAGCCATTTTGGTGCTTTTCTTATCATAGAGAAGCTAGCCAGGAGCCAAGCCAGAGACACACGCACAGTTAAATCTGAGTGCTTTTCCTTGCACTGTAGCTGAGAACAGCAGGTGAGGGCAGGGGTTCCTTGTCCTGTTATATTAAAAAACATGAGAAGCTGTGTTTCTGAACTGGCTTTGTTCTGTAG
Seq C2 exon
GTATCATGGCATGATCTCTAGAGAAGAGACTGACCAGCTCCTGAGTGTGGCTGAGGGGAGCTACCTCATCCGTGAGAGCCAGCGGCAGCCAGGAACGTACACTTTGGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056486:ENSMUST00000112024:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(53.5=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types