GgaINT0047748 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37140521-37141806:+
Coord C1 exon
chr7:37140521-37140629
Coord A exon
chr7:37140630-37141729
Coord C2 exon
chr7:37141730-37141806
Length
1100 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTTTCCTCTTCTCTTTTCAGTAT
3' ss Score
12.03
Exon sequences
Seq C1 exon
GTACAATACTTTGCCAAGCCGAAGAACTCTAAAAAATTCCAGACTAGTGAGTAAGAAAGACGACGTTCACGTCTGCATCATGTGTTTACGTGCCATCATGAACTACCAG
Seq A exon
GTACTGCCCTTCTCATTCTTCTGGCCCACAGCACCGCTGTTGTTGGGGGGAAAGGTTAGCTGCACACGATACAGGTGAAACTGATGTGAAGGATGAAATTCTTATTGTCAGACAGCATAGCTGGGAGCTGCCTGGCACAGTCCTTGTGCACCCGCACAGTTGGCACGCGTGAGGACACAGATAAGAGCACACGCATGCTCCTGTTTGCAGTGCTGGGCTCTGTTGGCACTAACTCGTTGGACATGCACCTGCACGATAACTGCTGTCAGAGTTTAGCATTAACCTGGAGGAAATGGGAGGATTTTTGAAGTGTTCTTGTTAGGCACTGGTGGGAAAGAGAGGATTTCACTTTGCTGGATGTTGATTGTGAGGCTGTTGTGATAACTGCAAGTCAAAGAATAAACTGCACCAAACTAATCGTGTTTCCATGAGTTTCTTCTCTACTTGGAGGCATGCTGTGGTCACATGGCATGCCCAGGTAGCTCCTGAGATGCTGGATTTTTTGTTAAACCGGTAACAACTAACAGTTATGTGCTTCAAGGAAAGCCTGGCACGAGTTGTGTGGTCTTACAGGGGGCTTCTGGCACTCTGACAGAGCTCCCTACCTCTGATGGGAAGGTGGCAAACAACAGTACAGTTGTGGTAATAACCCATGTTGTGTTTTCCAAAGCAGTTCCTTTCCTTGGTTCTGGAAGCAGACCCAGCAGGACTCACCCAGTAGCTGCATGCAGCAGTTGCTCTGTGGCAGCATGCATGTTGTAGAAGTGATTTTGGCAGCTGAGCTGCATATTCACTGTTAGAGAGGAAATGGCACACTTGTCTGTCGGTGTTAACAGTGCTGGGGAAGGATGGGCTGAGGGGCTGGCAGTGGGGTGGGATCAGCACTGGGACCCTTTTGGGTGGCCAGCACGGCCAGGCTGTGCACTTTGGGCATGGTGGTGACAGGGGAGCTGATGGGCATGGTGTGAGATGGGAATGTTCTGAGTGTATCTTGGTGATCTCAAGAGCCAGATCTGATCAGACACGTGTAATCTGTTGGGATTTAAAACTAATCATTTCAGTTTCAGAGCAGAAATGGTATTTTCCTCTTCTCTTTTCAG
Seq C2 exon
TATGGATTCAATATGGTCATGTCGCACCCGCATGCCGTTAACGAAATTGCACTAAGTCTGAACAACAAGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(45.3=91.9)
A:
NA
C2:
PF063718=Drf_GBD=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATACTTTGCCAAGCCGAAGA
R:
CTGGGATTCTTGTTGTTCAGACT
Band lengths:
184-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]