GgaINT0048004 @ galGal4
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15330119-15331542:-
Coord C1 exon
chr7:15331390-15331542
Coord A exon
chr7:15330245-15331389
Coord C2 exon
chr7:15330119-15330244
Length
1145 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ACTTCGTGAATTTATTTCAGGTA
3' ss Score
8
Exon sequences
Seq C1 exon
TCAAAGGTGGCAACTATGGAGGTGGTCCTGGCTATGGCAGCAGAGGGGGTTATGGTGGTGGTGGAGGACCAGGATATGGAAACCCAGGTGGTGGATATGGAGGTGGAGGAGGAGGATATGATGGCTACAATGAAGGAGGCAATTTTGGAGGTG
Seq A exon
GTAAGATGCTAGCTCAAATTAGCTGACCCTTTTCTCATTCAGGTCTGAGTAGGATAGTGCAGAATGCTGTGTTACACAATTCTCCTCCCTCTGGATCAACTTTGATTAAATTATGCAACACTAATTTGCTTGGAACTTAATTTTCACAGAGTAGCTGCTGTAAACGTGTGGTGGTAGAGTAGGAGAACTTCAGTTTTTGTCCAATTGAAATATGCCGTTGGGTATCAGTTTGTACCACGTGGATGGTGTCCTCCTTTGTGAGGACTAAATGTCTTATGTTTATGGAAGCTTTATTGTCTGGTTGTGAAATGAGGTTCCTCAATAATTTTTATAAGAGCAGTCCTTTGGCCTATTTTGCCTTTTGAAATAACCAGGAACCACGTTATTACGTGGCTGTTTTACAGCACTAGCAAGTGTAAACCCTGGATGGCATGGAAGACATAAAACAGAAGTCTAGCTGTGTCCTGTAAAATCAGTTCGGCCATGTTCTTATTCTGTGTTGTCAGTGTTAATATCTTTGCAGGAGTTTCAAAATGATATGGTTAGTTTCTAAATCTGTGATTGCTTCTGGAGAGGCCTTCAATGACGTGTTTCTTGTCAGGGTATACCACAAACACTAAAACATGCGTGGTTCTTGACTAGAATTTTTTGGGGAAGAAGCAGTAGGAACATGCAAGGACTCAGTGCGAGTTGAGGGGGCTAAGCTGCAAAATCTACTGCACAGTTACGAATACCTTCTGGGGTATTTATGCGCTCATTACAGTTTTATCACTTTTTACAGCAAATAAAAATTGCTCTTGGCTTGTAGTTTATGGGATTGTCACGTACAGAGCACTGAACAGTGGAAGAATGATGGTGAAACCGGAGTGTTTATCTGAGTTGGGAGGCATTAACTTTGGCCTACCATGTTAATTTCAAATTGCTACTCAAACCTGTATGAACTTTCTAAGATAGCCTGCTATTTTTCTTCTTCAGTGATATACCGACTTCTCATCTTGGGAATGCTAAGGGTTTTGCTGTCATATGTGCATTGCAAGTAGAGGTAGCGTGCTCAGTGCTTGCAAGTCTATTATAAATTGTTTGAAATAGCTGTTGCAGTTTACACTGAATGTCAGAGTTTCATGAACTTCGTGAATTTATTTCAG
Seq C2 exon
GTAATTATGGAGGCAGTGGAAACTACAATGACTTTGGTAACTACAGTGGACAGCAGCAGTCCAATTACGGTCCCATGAAAGGTGGTGGCAGTTTTGGTGGTAGAAGTTCAGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGTGGCAACTATGGAGGT
R:
CACCATAGGGACTGCCTGAAC
Band lengths:
278-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]