HsaINT0076976 @ hg19
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Coordinates
chr2:178082433-178083887:+
Coord C1 exon
chr2:178082433-178082573
Coord A exon
chr2:178082574-178083764
Coord C2 exon
chr2:178083765-178083887
Length
1191 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TAAAACCTTTCTGATTTCAGGTA
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATGGTGGAGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTG
Seq A exon
GTAAGCATTCACTTGTTTTATTTAAATGTTAAATATTCAGTGTTGCTAACAGTTCCCATGACACATATTTGGAAAGTGTTAAAAGCGTTTGATCAAATTTTATGTTCTATAAGAAAAATACTAAAATGGTTGGTAGTTCAAACCAAATTTTCTTGACTTTGCTGGTTATTTAGTAAAATGTACAAATGTACTCAGCTCTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCATTGCAATCTCCGCCTCCCGGGTTCATGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGTATGCCAGCACGCCCGGTTAATTTTTTTGCATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCTTCTGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACTGCACTCAGCCAAATGTACTGAATTTTTAGTTGAGTAGTAAAAAATGGACATTTACCAGTATTCAGTACATGTTTTACGTGTAAAAGATTGGGAGTTTATTTATTGCCAAAATTTTACTTAACTCCTTGGTACTTTTAAACTGGACAACCGGGAATAAATTGTTTGAATACTCCAGACGTGTTGAAGTGAGCAGGTTGCCATCTAGGGCCCAGGTTAACAAAGTACTTTGGGTCTTAATATAATATGTCACAGGTAGTTGAAGCGTTTAAGCAAGCTAGTGTATGTAGGTCATTAAGCCACAATACTGTTAAAAGCTTTCTTAGGAATGCACTGTTTTATTGGACCTAATTAACATGTCAATGACAGATGAGTGGAAGTTTTAACAAGTTAGAATGCCTTCTCATTGTTTTAAATGTTATACTGCTTCAGAATCATAGTGAATGGAACACTGGCAATTTTAATGGTGTTAATGGTAGAGAGAACATGCGCCTAGAGGACAGCATTTAATATAAACAAAATGTTGATGGTCTTTTAATATCCTGACATCAGTTACCCCAAGTGGTGCTACCACAGTGATGTGTATAAGCATGCTACCATAATTCTCAAAAGATAATAGTTACATACGTTAAAAGGGGAAAATGATGATTGTGTAGGTAAACCACACATAAAACCTTTCTGATTTCAG
Seq C2 exon
GTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-HNRNPA3:NM_194247:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.768
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PU(94.7=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTATGGCGGTGGTC
R:
GGACTGCCCGAGCTTCTTC
Band lengths:
254-1445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)