GgaINT0048257 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21157588-21159909:+
Coord C1 exon
chr7:21157588-21157812
Coord A exon
chr7:21157813-21159788
Coord C2 exon
chr7:21159789-21159909
Length
1976 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTATGAATTATATTTTGCAGTCC
3' ss Score
5.67
Exon sequences
Seq C1 exon
AAGGATCATATACCAGCACTTCTGGGAATGGCTACAGCCTACATGATCTTGAAACAGACTCCACGAGCTAGAAATCAGTTAAAGCGGATTTCAAAAATGAACTGGAATCCCATTGATGCAGAGGAGTTTGAAAAGAGTTGGCTTCTGCTTGCAGACATATATATTCAGTCTTCAAAATATGATACAGCAGGTGAATTATTAAAACAGTGCCTTCGGCATAACAAG
Seq A exon
GTAAGTGACTGCTTATTATAAAAAAAAAAAAACCTTTTTATTTTAATTCACGTAACTGTTTATTTCCCATCTGAAGCATGGAACAGGATACTGTTTATACTCTGCAGATTTGGTTTAGGAAAGGACTTGATTGTGTGTGTTTCTTTTCCTTGATTCATAAATACAGGAGGCAAGGTATATAATTCAGTCTCATTTCTGAAACCTCGCTGAGAGCTTGCCTTTTTCAAACTCTTCTTTTTTCTTTGCTTGAAATTAAGGAATAGATAGCTACAGCAGGTCTTAGTGTACTTCTATCATGTACATCTGCAGATACACCTCTTGAAATTGAATACATCCGTTTTTATTTCTGTAGAAAATGAACTATAGTTTAGTTAAGAAGAAATTGTACCATGAGGGACATTTACCCACTTGTCTGGACAGTCAGTAGAAGTGGCATAACTCTATGTCAGAGTAAATATGAGTCGCTTATTATAATAAAATAATAATAATTTATAATATAAAAATTATATTATAAGACACATCTTTAAATAGGTGGTCTTTTTAGCATGGCTGTGCTGCTAGTTACATATTGTTGTAGAAATTCCCTAGCAGCTCTAAAAACATAGCCTATGTTAGCCTGCCAAATTGCTTCTTTTCATTTAAAAGGCTTGAATTACCATGATAGGGGAAAAGTTAGCAATTTAGAAATCTGAGGCTCATTACCAAAACAGCATAGTAAAGCTGACTTTTCTCTAACCTTTTCGTAAAGAAGGCAAGCAGGGGATGTACCATACAAATAGATGTTGACTGTTTTAGATCTTTCCATGCTATCCTACAAGTTGGTATATTTTGTTAGATTGAGAAAACTCATTATTGTAATTGATTTATTATTCTTAGGATTGCTTTTAGCAATCAGTAATTACTGTTGTGGGTATACATGTACAATGTAAGTAAATACATTGAGTAAAAACTTCATAAGTCTAGTATCTTGTAATAAGGCTTTCTTTCGATCTGAAAGTGTTAGGTTTGGTTAATAATCTAATAATAATGAGATTCCCAGCACTTTTTGTTAAGTTAGAGTTTCTTACCTATTTCTTCTCTTGTTTTTATATATATGTATATTTTTAATCACAAATGAGAGAAAGTATATTTTTATTCAGGTCCCAGGAGCATTCCTCCACTGTTTGTCCCAATATGCTGTGATTTAAAAGCTTTTCATCCTTGCTCTGCCTTTGTAAACAAGCTGTACATATTCATAAAAGTCTTTTAATTTTTCTACTGAAGTATTACAACTGTTGTCAACACGATAATCTGTTTACTTAAGGCTGTATGGTAGTTAGGACTTCTGTTTACTTTCACAATTTTTTCTGTTTCATTTACGAAATAAAATATTCTTGTATCAATTATTAAATCTTTTCTACTAATTTTTACTGCAGAGTTAAATTGATGTGCATGTTTGTGTGATATAAGCACAACTATTATTTTCACCTAGTACTTCTGGGACTTGTTTCTTGGTTCCTTTTAAGTTACCACTTGGAATTACAGAAAATGAAATATTTAATGTTCGGTGTTTTCTTCGGGACATTTGTGAATGTCTTTTGTTTTAAATGGAAAGCTGTAACGTATAAGTTTTCAAAATTAAGGCTACGGAAATACTTAGTGAAGGAAAAATGAAACTATTTGTGGAAGATATAGCAGTTCCTGGCTGGACTTGAAATGCGTTCCATAGGATTATTAATTCAGAGGTATCTGCAGGGCTCCTGGAGGCACTGAACATTTTTGGAGTAATTGTGGTGCCCTCTGTGATGAATTCTGCACTTGACTCGGGGTGACTTAAGTCATTGCAAAACTCTGTGTAAATGATTTTAAATCAAGACTATCTTGTCATCAAAAGTAGTACAAGTATCACTTAAGCTTTCTAGTTGCAGAGATGTCAAGTATTTATGCAATTAAATGTTGATACCTAAATAAAGTCTTGTATGAATTATATTTTGCAG
Seq C2 exon
TCCTGTTGCAAGGCTTATGAATACATGGGATACATAATGGAAAAGGAACAAGCGTATAAAGATGCAGCAATAAATTATGAGATGGCCTGGAGATATGGAAACCAATCAAATCCAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(97.4=98.7)
A:
NA
C2:
PF134241=TPR_12=PD(0.1=0.0),PF134141=TPR_11=PU(56.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCATATACCAGCACTTCTG
R:
TTGTTGGATTTGATTGGTTTCCA
Band lengths:
342-2318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]