GgaINT0048373 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:18126613-18127853:-
Coord C1 exon
chr7:18127766-18127853
Coord A exon
chr7:18126643-18127765
Coord C2 exon
chr7:18126613-18126642
Length
1123 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
ACACCCACTGGAAACAACAGAAC
3' ss Score
-0.87
Exon sequences
Seq C1 exon
ATGAAAGCTTTGCTGTAAAGCACAACAAAGAATTTCTTCTTTCAATGGCCAACCGAGGGAAGGATACAAATGGTTCACAGTTCTTTAT
Seq A exon
GTAAGTACTGAGCTGTTCTGAAATTTGTGTGACTTGCTCTTTTGTAAGCTGTAAAGACTATTCTTTGAGTTTGCATGGGAGTTAGTCGTATAAAAGTTGATGCCTGTTTAGGAAGTTACATGGAAATAGCCATTTTCCTACTGAGCTCCTTAGGGAAAGTTTTTATCACTGCCATTTGGTGCTTATTGTCTGTGCAAAAGACCTTTTGGTCCTTCTTAGTAGCGGTCTTCTAACTCAAGCAACAGCGTAAGTCTGTTAGCTCCCTGTAGAGCTTTTTCACTTTCTCCTAGTATATGTTGTCTGGAAGGAAGCAAAAAAAGTTCCAGGGGTTCTCTAGCTCAAAGTAACAGAAAAATTTTCTGTCACAAGGTAACTTCTCAATGCATTTATAGCTATATCTGAAGTTTAAACCTTTGAAATGCATCTGCATTACGTGCTTCTTTAATTTAGTTATAGAAGTAAATACTTGAAATTCATCAGTCTTATCCATGTCTCGTTACCATAATTAACATGGTAAGTTGTGCTTGTGATTTATCATTAAACTGTTACTTTGGAATATTTGGGTGATTGGTGATTGTTACTATATTTGGCTCAGGTTCTGGGTTGCCTTTTTTTTTTTTTTTTTGCCACAGCTGACGTGTATGCCTTAGTAATCCTAATATAGGGGAAGGCTATGAACTGTTCAGTTGTCTGGAGGTGTAGAGAGTCAATTCTACTTTTGATGTCAAATATTCTATACATACAGATATTTTTTCTTCCTTTGGTGATTTATTTTCCCATAAGGTTTTGTTGTTGTTGTTTTGCAGTTTTATTTCTGTTCCTGGTAGTATTCCTGTAATTTAATAAATGCAATTCTTAATATGTATTTTTTTTTTATGAGGATGGGTCTAAAGATTTATCACAAATTGTTCAATAAAATGTGGTAAGGGATTGAGTAGGTAGTTGTGTAAACCATACAATGTTTTTAACTGCATACAAACTTAGAAAAATATATATTGGTTGTTTTCAATTTTATTAATTCAGTAACTTTCTTCATCTGTGTACATGCTTCAAATGTTGTCTGCTTTCCACTAAAATTGACTTCTGTTTTCCCCTTTAAATTTACACCCACTGGAAACAACAG
Seq C2 exon
AACTACTAAACCTACACCTCACTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]