RnoINT0115975 @ rn6
Intron Retention
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55971314-55972666:+
Coord C1 exon
chr3:55971314-55971401
Coord A exon
chr3:55971402-55972636
Coord C2 exon
chr3:55972637-55972666
Length
1235 bp
Sequences
Splice sites
5' ss Seq
TATGTATGT
5' ss Score
3.25
3' ss Seq
TATCTGATGACTTCCAAAAGAAC
3' ss Score
0.61
Exon sequences
Seq C1 exon
ATGAGAGTTTTGCTGTTAAACACAACAAAGAGTTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGCTCTCAGTTCTTTAT
Seq A exon
GTATGTATTTAAGGTCTCAAATATCCCTGCTAACCTTCCCCATTCCCTTTATAAGAGAGAGACTGTAAAATTATAGTAAAAGTCCCAGGTGACATAGCTTGCTGAGAAAGTAATAAGTGGATTAAGGCATCCATTGTCAAAGAACAAACTCCGGAATCTATCCACCTCATCAAGCACCATCCATTACTGTACCCAGCTTTCAATGTGGATTCTAGGGATCAAATTCACGCTTGTACACCAAATACTTTATCTGGCTATGAGCAATTTTATGTACCAGTATGTCTCTACATAAACAAATACCAGGCTTCAAACACATAGTTTTAAGGTTGAGCTTGAGAATAAAAGGGGGAGGGGTGCTTGGAAAAAAATGCATTGAACAATAAGTGTTTTCTTTAGATTCAGGTGAGTTTGTTTTGAAAGAGTCTCTTGACCAGTCTCCTTGAGCCCCATCTTAGCTTCCCCAGTACATGTACCATTATGCTCTTGTTTGGAGATGACCCAGTTTAATTCAGCTTTTCTTCAACGCAAAATTTTACTCACTATCATACATAACAAGCTCAAAAGCCTAGAGAAGTTAAATAACATAAGTAAGCCTGTTGGAACATGGAATCTCATGTATTAATACCTGTGTTGAAGAAAACAGGAACACTAAGTACTGGTCACTTACTCTATGTGCTAGGTACTATAATTTTGAGATATTCCAGAGAGGTCGGGAACTTGGGTTTTCATGCAGAAGTGCCTACAATTAAATGTTTAAAATATATGAAACTAAGTAGACTATTTCTATTCAGGCTCAACAAATACATCTCAGAGCCATCAGATCGACAGTTCCCACCTCTCAATTCCTCTAAAACCCTCCACTTGAACTGTTTAAAAGGTTAGGGTGAAAAGTACTGTTGTTAAACCCATAAGTTAGAGAGATTTGGTAAATTTGGCAGTGCCAATATAACATAACATCATATAATCAGGAATATTTAATAAAAACCTAGTTACAAGTAGAAATACAAGTGGATGGAATAACTCTAATGTCAACTATTCATGCACTTACTAGTAAGTGGGTATGACTTTTGTATTCAGAACGAGCTTTAAAACCTGCATGGAAAATCCTCGCATTCATAATGAGGTTCTGCTATGTAAGGGCAGTACATGATTTCTTACTTTCAGTCACTCTTTTCTTTTTATAGAAGCTAACTTTGTTTTTGTTTTTATTCTTTTTATCTGATGACTTCCAAAAG
Seq C2 exon
AACAACGAAACCAACTCCTCATCTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673:ENSRNOT00000010216:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]