GgaINT0048440 @ galGal4
Intron Retention
Gene
ENSGALG00000012444 | ACVR2A
Description
Activin receptor type-2A [Source:UniProtKB/Swiss-Prot;Acc:Q90669]
Coordinates
chr7:34047776-34049291:+
Coord C1 exon
chr7:34047776-34047919
Coord A exon
chr7:34047920-34049145
Coord C2 exon
chr7:34049146-34049291
Length
1226 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TCTTCTTTTTTGCTACGCAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GACAAACAGTCGTGGCAGAATGAATATGAAATTTACAGCCTGCCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCATTGATGTGGATCTCTGGTTAATTACAGCTTTTCACGAAAAG
Seq A exon
GTTTGTTGCAAATATGGCCTTCAGGTAGTTAAAGAAAATGTAAATAGCTTTCACTTAGTGTTAAATTTTGCAGGATATGGATTTATTTCAGTTTATTTTCAGCTGTCTGATAAGGCTGTTGTCAGTCTTCACTTAATAAAGAAGTTGTTTTACAAAACATAGAAATATTTATTCTACCCTTCTGCTTCTTACAGTGTGTTTATGCTTGCATGTCCCTCATCTAAATTTGCCTGAATTAATTCCATCTCATAGAGATTGTGACGTAATGTTTTCAGTTCTGGCATTTTTGTCCCATTTGTGCCTCTTCTTTAACCACTGAGAAGATTAAAACTATCAACTGCTTACATTTTTGGCAGACCTTCACAGTCAGTGGGTGACACCAAACTGATTTGCCTTTCCAAGAGGATATTGCCATGTTTTTGCTTTTGTTTTTGTCTGGGAGTTTCTCTCAGATGACTCTGGAAAATACAAAAAAATTGTTCTTAAAAATATAGTTTCTACACTTTGACAGCATTCAGTCCCTTCTTCCCTTTTCTGCTGGCTTTTCTCATGTGACACAGTGACATGTCAAGTTGGATTGTAAATCCAGGTGCACGTGGGGGGATGTGGAAGTGAGTTTGAGGAGAAGTGCTTTCTATTGACTAGATTTTGCTTCACAGTCTCTCTCTATTCAGAGTATGTACTTCACTCTAAAACTATGAGATAGATGTAGGATTTACAATCATTAGACCAGGAGAAAAGAGAGACTATCAGTTGAAGGGCTCAGAGAGTGCACGTCCACAGTTGAGCAGATTCCTGAAGGTGAATCTAACCTGCAGTTTCCTGTGGCTGGAAGGCCATAAGTCACCCTAAAATAGCAGGGTTGTCTTCTTCGTAAAGAGCTAAACTGTGTAAGCCTAGCTCCCATTTCTGACATGGGCAGCTATGTGCAGATTGTTGGCATGTGTGCCACTGAGCATGAGTTGATTTATGCTGCTCCATTATCAAAGTGATACATGGGCACATCTTTCTTCTGTTCACAGACAGAGATGATGCAAAGGTTAATATTTTGTTGTAGTTTAAGCTAGCAGTAGATGTGTGTGTGTAATGATAGGATTTATCAGAAAACCGAGGAAGGCAGATAAGCATACCATGGTATTTTTGGATGGAGGCTATGCAGAGGTTTTCCTTATGGCTTGATGGAAGTGAAATTTATCTTACAATTGTTCTTCTTTTTTGCTACGCAG
Seq C2 exon
GGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCCTGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAGACGGACATAAACCCGCCATCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444:ENSGALT00000037806:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGTCGTGGCAGAATGA
R:
CTGTGTGAGATGGCGGGTTTA
Band lengths:
289-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]