RnoINT0012787 @ rn6
Intron Retention
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33023269-33024791:+
Coord C1 exon
chr3:33023269-33023412
Coord A exon
chr3:33023413-33024645
Coord C2 exon
chr3:33024646-33024791
Length
1233 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TCCCACCTCTCCTTCTTTAGGGC
3' ss Score
11.67
Exon sequences
Seq C1 exon
GACAAACAGTCCTGGCAGAATGAATATGAAGTCTATAGTTTACCTGGTATGAAGCATGAAAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCACCAGTGTTGATGTGGACCTGTGGCTAATCACGGCTTTTCATGAAAAG
Seq A exon
GTATAATGGCTTAATCCCTAAGTTTAGTTAAGCTGGACTGATGCTAACTATATTTCAAGAGAACAGTATATTATCACAATTGATTAATATTTGATCCAAAATATACATCGCTTATGAATAAAAATATTAAAAGGTGACTTTAAGGAAAGAACAGCTTTTTACCTAACCCTCTAATCATAGAAAGACTTTATAGTCTTTGCTTTTCTGTGCTGCAGTTACTTCTCTTAGCGGGACTTTAGATTAGACAGTGCTTATGGTTTTCATGTATTACTTATGACAGTTAATTTTATGAGCCTCACTTTTTTTATCTTTAATTTTTGCCTTATAACTCTTTAATGATGAACCCACAGTCACTGACTTGGAGTTATTACCAAAACACATTTGCTATTTCATCATTTTGCAGTTAAATTTTTTTAAAAAACAAGTCTTTAGTGTAGCACAGGCTGGTCTCAAACTCATTTTTGTGTCCTAGCAGCCTCCCAGGGGCTGTGATTGTGGGCTTGGCTTTTGTCATCATTGTTAAGTCTAACTGCTTATATATATAAGTATTTGACCATATGGATCATAATCTCTCTAGAGAAGGGGTGTGTGTGTGCCTGTGTGTGTGTGTCATAGCATTATGAGTTAGGTGCACGTGTGCAGACCCTGGTTTGTGTTTTCAGTGTCTTTTTCATTTGCTTTTCATGTATTTTTGTTTTCTTTTTTGTTTGTGTTGTTTTTCTTGCTTGAGGCACTGATGCTTCCAGGGATCTAGCTGTGTCTGTGTCCTCCTAGCACGGGGCTGGTAGACTAATACAGATACAGGTCTGAGGCTCTGGGCTCAGGTCCTGATGTTGTGTGACAGGCACTTTACCAACTAAGTCATTGCCTCAGGACTAGTCTATAATTTAATAGTTATTTATGTTTTCAGTGGAGTTCTATAATGTTAGTATGTTTCACCTTAGAGACTTGAGGGTTTTTTCTAAGATTTTGAACTAGTCTTTGTTTTTAACCTCCCCAGATTCAAGGAAATTAACTTATTTTGGTAATAAGCCTTTAAAAAAATCAGTCTTTTTTGGTTGAATGTTCATTATTATGAATTGAAAGGAAATTTGAACAGCTCTATAAAATTTGTTTTTTTTTTTATTTGAAAGGAATGTGTTGCTTTCATATCCTAAGAAAAGTTTCTGTGTCTGTAAAACGTTGATGAAGAAAGAGCTTATGGGTATTTTCCTCCCACCTCTCCTTCTTTAG
Seq C2 exon
GGCTCACTGTCAGACTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAACTTTGTCATATTGCAGAAACCATGGCTAGAGGATTGGCATATTTACATGAGGATATACCTGGCTTAAAAGATGGCCACAAGCCTGCAATATCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334:ENSRNOT00000007404:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGTCCTGGCAGAATGA
R:
TGAGATATTGCAGGCTTGTGGC
Band lengths:
286-1519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]