GgaINT0048532 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38182834-38186050:-
Coord C1 exon
chr7:38185720-38186050
Coord A exon
chr7:38183237-38185719
Coord C2 exon
chr7:38182834-38183236
Length
2483 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TCTTTTTTTTTTGGAAGTAGATG
3' ss Score
4.11
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
GTGAGTGGCGGACCCTGCCTCTGCTGCGCCGGGAGGGGCGGCGGTGCCGGCGGAGTGAGTCGTGCCCCAAAGTGCCGGAGCTTTTTCTGTACCCATCTGCCGGTGGCTTAAGGGTTAAAGAGGAAGCTGCTGGGGAAGGTTGTACTGTCCCGTTAAAGCCTCTGTCCGGTAGTTTTAAAGAGAATCGTGATAAAATTGGGGGGGTCCTGATGTTAGGACAAACAGTATTAAGGATCGGACCTGCAACTAAAGCAGCATGCTGTATGCTGCTCGGGAGAGCGGTTACGTTGCCCTTAGATATGTGTATGTATAAATGTATGTGTGTGTACCTGCATACGCTTTACAAACATATATCTCCACATATACAGGCATATGTACGTGTATGTATGTAAAGCCACACTTCGTTGTTTGTGGTGGCCTCTGGGCTTGGGATTGTCCAGACAAAGCACGTAAATAATAGTGTGCTGATTTAGACCTTGGCTCCGCTAAAGTAATGCAGCAGCTATTCCCCACCAGAATCAACATGGAACTGTAGGCACTTCCTTTTGGCTCCATACTTCCTTTTTCCCTGGATGACTGGTCATGATCTGTAGCATAAGGGAACTGGCTAGAATGTATTTTGGGGGAATTTCCCTGACCTCAGCCGTGTGGCACACTTGTCTGATGCTGATGTCTGTGAGGCACGATAGTCCCACAGCCTCTGTACCTGGAGAATACTTGTGGAGTTCCCCTTGTTGTAGAAGCAAATGCAATTTCAGAGGCAGTTCAAATTCTCATCTCCGTCTCTGATTTAAATGCACTACTCAGTTTGCAGTATTTGGTTTACAGTAGTACACAGTTGCGTAGTACGTAAACGTTAAAGAACACAGAAGATAAAAATGGTAGAGCTTCTTGGCCATACAGGGAACTCACACCTAACTGAAGTTTTCACCATCTACCTGATGATGCTGTCTGTCATGCCATTTTTAGTCTTTGTGAGCCTTCTGCAGTACTCTGAGCAGCTCTGTTCCTGCCTGAGCCCTTCTCTACAGTTCGAATTCCCTTCTGTGTGTCTTTATCCCCTCTCAGTATCTCCCTGGTTCCTTACTTCTTCCTGTTGCCTGTTTCCTCTTTCCCTTGCTACAGCCAAGAAGAGAGAAGGGACGGGGATGACGAGAAGCAAGGGGACAGCCTTTCTTTCCAGTTTTCAGTAGAGCAGCTGTGGTTTGAGCCCTCTTTCCTTTCTCTGACTTCTCATGCTCCCACCAACCCTTGCACTAAGCACTCCAAAGCCTATCTGTGCAGAGGTGCAGCAGTGCTGACTGAAGATGTAAATTTTATTTTTAGAATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAGGTAATTGCTTGGTTTAATAAGAGTAGGGAATGTGATAAAAAGGAAGAGGCAGTGCAGTTTCTCATCTGTCGCATTCAAGTCTCAGTTTAGTCTCTGTTCTTGCTTGCTTCTTATAGCCGTTAGTTTGGAGTAGATGTTAGTTTTTGGAAGAAAAGCCCAACTGTAGTTTTTAGTGATTTCTTTTTCCAATCCAGCATACGTTTGTGGTCTGCTCTGCTCCCAGCTGGAGATCTAGCATTCATTTAACAGTCTTTTTTGTACACATAGCTGTAGAGGTGCCAGCTTTATAGGGATGATGGAACAGGGTTCTGCTGCTTTCACAAAACTGTTAATGCTGATGGCTTTGAAGTAGATAAATGGCACATCCAGTTAAAGAGAGGATGGTTTGAAAACAAATGCAAAGATACCTTTCAGTTACTTTGTGCTAGCTTTTTAGGAAAACTTTTGCTTTTTTCCTATGTAAATAATATTAAAAATATCGTTGTATCCATGGTGCAACCCAAAGTAATGTTTTGACACTGAATACTAATCACATGTAGGAAGAGATATTTGTTTTATATGTAGCAAGTGGTTTATAAGTTGTTAGCTTGATGACTAGTTTCTACAGTGCATATGTACTCCATTATGTTTTGCGTAGGTCCAACTGGGAACAAATTTGAACAGCAAACTCAGCATAAATGAAAGTACTGGAACAAAGTATGTTGCCATTGCCCTAAAATCAAGTAGTTTTTATGTGAGCTTTAGTGTTGTATTGCAAACTTGTGAGTTGACTTAAATAAAAGTTAAAATATGTTTTACTGAGCAAAAACCCCTCATTTCCATGTTGTGTATATGCTCGGCTTTAGGTTGAGGCTAAAACAGTACTTAAGTGAAAAATTAGCCTCTGCAAATCAGGTATTTCTTCCAGGAGAATGTATTTTATAAGGTACCGTGTACCTCTCATTTATGATTTATCTCATAAATGTTCGACATCTCTAAGGAGAGATGTCTAACTGTTTTAACTTTTCTTCAGGTTTTTTTTCTTTTTTTTTTGGAAGTAG
Seq C2 exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]