GgaINT0048532 @ galGal4
Intron Retention
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36046498-36049713:-
Coord C1 exon
chr7:36049383-36049713
Coord A exon
chr7:36046901-36049382
Coord C2 exon
chr7:36046498-36046900
Length
2482 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTCTTTTTTTTTGGAAGTAGATG
3' ss Score
3.85
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
GTGAGTGGCGGACCCTGCCTCTGCTGCGCCGGGAGGGGCGGCGGTGCCGGCGGAGTGAGTCGTGCCCCAAAGTGCCGGAGCTTTTTCTGTACCCATCTGCCGGTGGCTTAAGGGTTAAAGAGGAAGCTGCTGGGGAAGGTTGTACTGTCCCGTTAAAGCCTCTGTCCGGTAGTTTTAAAGAGAATCGTGATAAAATTGGGGGGGTCCTGATGTTAGGACAAACAGTATTAAGGATCGGACCTGCAACTAAAGCAGCATGCTGTATGCTGCTCGGGAGAGCGGTTACGTTGCCCTTAGATATGTGTATGTATAAATGTATGTGTGTGTACCTGCATACGCTTTACAAACATATATCTCCACATATACAGGCATATGTACGTGTATGTATGTAAAGCCACACTTCGTTGTTTGTGGTGGCCTCTGGGCTTGGGATTGTCCAGACAAAGCACGTAAATAATAGTGTGCTGATTTAGACCTTGGCTCCGCTAAAGTAATGCAGCAGCTATTCCCCACCAGAATCAACATGGAACTGTAGGCACTTCCTTTTGGCTCCATACTTCCTTTTTCCCTGGATGACTGGTCATGATCTGTAGCATAAGGGAACTGGCTAGAATGTATTTTGGGGGAATTTCCCTGACCTCAGCCGTGTGGCACACTTGTCTGATGCTGATGTCTGTGAGGCACGATAGTCCCACAGCCTCTGTACCTGGAGAATACTTGTGGAGTTCCCCTTGTTGTAGAAGCAAATGCAATTTCAGAGGCAGTTCAAATTCTCATCTCCGTCTCTGATTTAAATGCACTACTCAGTTTGCAGTATTTGGTTTACAGTAGTACACAGTTGCGTAGTACGTAAACGTTAAAGAACACAGAAGATAAAAATGGTAGAGCTTCTTGGCCATACAGGGAACTCACACCTAACTGAAGTTTTCACCATCTACCTGATGATGCTGTCTGTCATGCCATTTTTAGTCTTTGTGAGCCTTCTGCAGTACTCTGAGCAGCTCTGTTCCTGCCTGAGCCCTTCTCTACAGTTCGAATTCCCTTCTGTGTGTCTTTATCCCCTCTCAGTATCTCCCTGGTTCCTTACTTCTTCCTGTTGCCTGTTTCCTCTTTCCCTTGCTACAGCCAAGAAGAGAGAAGGGACGGGGATGACGAGAAGCAAGGGGACAGCCTTTCTTTCCAGTTTTCAGTAGAGCAGCTGTGGTTTGAGCCCTCTTTCCTTTCTCTGACTTCTCATGCTCCCACCAACCCTTGCACTAAGCACTCCAAAGCCTATCTGTGCAGAGGTGCAGCAGTGCTGACTGAAGATGTAAATTTTATTTTTAGAATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAGGTAATTGCTTGGTTTAATAAGAGTAGGGAATGTGATAAAAAGGAAGAGGCAGTGCAGTTTCTCATCTGTCGCATTCAAGTCTCAGTTTAGTCTCTGTTCTTGCTTGCTTCTTATAGCCGTTAGTTTGGAGTAGATGTTAGTTTTTGGAAGAAAAGCCCAACTGTAGTTTTTAGTGATTTCTTTTTCCAATCCAGCATACGTTTGTGGTCTGCTCTGCTCCCAGCTGGAGATCTAGCATTCATTTAACAGTCTTTTTTGTACACATAGCTGTAGAGGTGCCAGCTTTATAGGGATGATGGAACAGGGTTCTGCTGCTTTCACAAAACTGTTAATGCTGATGGCTTTGAAGTAGATAAATGGCACATCCAGTTAAAGAGAGGATGGTTTGAAAACAAATGCAAAGATACCTTTCAGTTACTTTGTGCTAGCTTTTTAGGAAAACTTTTGCTTTTTTCCTATGTAAATAATATTAAAAATATCGTTGTATCCATGGTGCAACCCAAAGTAATGTTTTGACACTGAATACTAATCACATGTAGGAAGAGATATTTGTTTTATATGTAGCAAGTGGTTTATAAGTTGTTAGCTTGATGACTAGTTTCTACAGTGCATATGTACTCCATTATGTTTTGCGTAGGTCCAACTGGGAACAAATTTGAACAGCAAACTCAGCATAAATGAAAGTACTGGAACAAAGTATGTTGCCATTGCCCTAAAATCAAGTAGTTTTTATGTGAGCTTTAGTGTTGTATTGCAAACTTGTGAGTTGACTTAAATAAAAGTTAAAATATGTTTTACTGAGCAAAAACCCCTCATTTCCATGTTGTGTATATGCTCGGCTTTAGGTTGAGGCTAAAACAGTACTTAAGTGAAAAATTAGCCTCTGCAAATCAGGTATTTCTTCCAGGAGAATGTATTTTATAAGGTACCGTGTACCTCTCATTTATGATTTATCTCATAAATGTTCGACATCTCTAAGGAGAGATGTCTAACTGTTTTAACTTTTCTTCAGGTTTTTTTTCTTTTTTTTTGGAAGTAG
Seq C2 exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]