GgaEX0018996 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36046498-36049713:-
Coord C1 exon
chr7:36049383-36049713
Coord A exon
chr7:36047940-36048056
Coord C2 exon
chr7:36046498-36046900
Length
117 bp
Sequences
Splice sites
3' ss Seq
GATGTAAATTTTATTTTTAGAAT
3' ss Score
7.31
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
AATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAG
Seq C2 exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATCTGTCGCCGGAGATC
R:
CCGTCTGTTGAACACGAAGCT
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]