GgaEX0018997 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36047940-36049713:-
Coord C1 exon
chr7:36049383-36049713
Coord A exon
chr7:36048180-36048257
Coord C2 exon
chr7:36047940-36048056
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTCCCTTGCTACAGCCA
3' ss Score
9.02
5' ss Seq
GTGGTTTGA
5' ss Score
-1.67
Exon sequences
Seq C1 exon
GCGGGGCAGCCTGCAAAGGTTCTTGTGAAGGCGGTGCGTGGTGGCCCGCGTCCTCCCGTCGGTTATTTTATTTATTTTATTTATTTTATTTTATTTTATTTCTTATTTTATTTTGAGAGGGAGGTCAGGGAGCCGAAGCGAGGGCTCCCAGAGCCACCCTCGGGTCTGGCAGGGATGGTACGGTCCGTTCCCGGGGACCCGCAACAGGCGCTGCTGTCCCCGCGGCCTCCGAGTACGGCGGCTGCCGTCCTTGCGGAAGGGCTGCGAGGCTGAACGCCGCGCCGTGCGGGCCCTTCTGAGCGCTGCCCTGAATCTGTCGCCGGAGATCGAA
Seq A exon
CCAAGAAGAGAGAAGGGACGGGGATGACGAGAAGCAAGGGGACAGCCTTTCTTTCCAGTTTTCAGTAGAGCAGCTGTG
Seq C2 exon
AATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574_MULTIEX2-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGCGCTGCTGTCC
R:
ACGGTCAGATGGAGAACAGGG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]