GgaINT0048535 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38176236-38177745:-
Coord C1 exon
chr7:38177653-38177745
Coord A exon
chr7:38176330-38177652
Coord C2 exon
chr7:38176236-38176329
Length
1323 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
TTTACTTTTTCTGGTTTTAGGTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATGGGGAACATGCATCCGGATGCTTCCAGATGGCATCTTGTGGTCAAGATAATAAGATCAAAGTCTGGTTTATTTTGTTTGCAGACTTCTTAG
Seq A exon
GTGTGTATAGTGATGCTTCTTCACATTTAAGTGTCTTAACTCTTTAGTGACAATTTTAGTGTCAAATTTACACTGCTGTCATGGATTTGCAGCCAAAATAACCACAAATTGGAAGTGTTCTTTTAATTGTGTTGCTAGAAAGCAGCTAATGCATGCTGTATTTTCTGAGATTGGGTCCTGTAGCTTTTTATTTAGTGATCTGTTTAGCAATAATAGTAAAGATTAAAAAAATATTCCCCCAGTCCCCTCAATATTGTGATAAATGTTTGCTTTTAATGATCATTTTCATCTTCTGGTAATGAGTTTTATTTCTACCTTGGCCTTTGGGCACATTCATAGTTTGAAACCTCTTGATCTGCTAGGCCAGGGAGAGGTTTCCTTTCAGTAATTTTAGCCTTTTGAGCAAGAGCTGGAGGAATGAAAACAGTGTGGCTGTGCTATAACTACAGTGTAATCTGTGTCAATGGTTTACTGTGTCTGTGACTAATGGGGCAGGGGGACCCACACACCCCTGGGAGAGGGGGAAGGCAAAAAAGGGAAAAGGCAGGGAGATAGGAGATGGGCCTGAAAACACAACAGTGACAATGAGCTAAGGGAGAAAAAACTCATTTACTAAGTATGGTATCAGCATGCAAGATAACACAATATAATACAATAGAATTGGAACTGAGGCTAATAAATAAAATGAGAGTGTCCAAAACCGAAGGCCTCACTGTGATGCTGAAGGCAGATGGCTGGGGAGCACGCACTGCAGAGAGAGCAGGAACAGAAGGGATGTCTCATGACTTGTGAACAACTTTTATCTTTCCCTCTGAATGGAAAACGGAAACTGAACAGTGAGTCTTCTGGGAGATGCAATTGTTCTTCTCTTCTGAGAACCAGGTACCTGGAAATATGGACAATCCACAGAACTGCAGCATTAACTCTTTAACTCTCAGTGCTCTATATGATGTTATGGTGTGGAGTACTGATGACAAAAATCCTAAAACCATGGCAGTGTGTGACTGCTATGCAGAGACAAGGCATATGGCCAAAGTCATCTCCAGTGGGAATTTTTGTCATTGCTTATATAGAAGTCTGTAAGAATGAATATGGAATGTACAGATACCCAATTATCTAAAATATTCTTAGGTGCTAAGACTACAAAGTGAAGAGGTCATGGAAGCTAAAATTACGCTATCTCTGTGATCCTTTGTCCCTTCTTCTATAGGCAGTATGTCACAGAGTCAGCTATCTGAGGCAGCTTTATGCCCCTAAAACCATGTTATCTTAATACTTTGTCAAATATATCAATTTGCAATAATTTACTTTTTCTGGTTTTAG
Seq C2 exon
GTGGTGAATTGAGATATAAATGCACATTGAGTGGACATTCTGCCCCAGTTCTGACTTGTGCATTTTCTTATGATGGGCAGATGTTGGTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(45.8=68.8)
A:
NA
C2:
PF0040027=WD40=PU(71.1=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGAACATGCATCCGGAT
R:
CCTGAAACCAACATCTGCCCA
Band lengths:
187-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]