HsaINT0182795 @ hg19
Intron Retention
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160128213-160132149:-
Coord C1 exon
chr2:160132057-160132149
Coord A exon
chr2:160128307-160132056
Coord C2 exon
chr2:160128213-160128306
Length
3750 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TGTTACCTTGTTATTTGCAGGTT
3' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGAGAACAAGGTCTTCAGTTTTTTCGACTGGCATCATGTGGTCAGGATTGCCAAGTCAAAATTTGGATTGTTTCTTTTACCCATATCTTAG
Seq A exon
GTATGTATGCCAAATAGTGCTTCTCTAAAATTATTTGTGGTCTGGATAAAATTTCTATTTAATCTTTTTACTTAAGGTACCTTGAGTATCTAAAAGTAAGTATTAAAATATGGTTTAAGAAACTTTTAGTCAAAATAATACACATGATTTAAAAATCAGATGCTCATTGATGATCATGACCTCACCCATTCTACTGCCATGCACATTTCTGCTCACCAGAGGTGACCACTTTGCACTTGATTTCAACTCCTTTGTGGTTTTCACAGTTTCTGTAAACACTGTTTATACCACTACATTTTTTTATTTATTCACTGTAGGTACTGCTTTTTGTTAGTGTGTGGGTCTTTTCCCATCCATTGTACTATTCCATCAGGTGACCCTTTCAGTCAGGAAGCTTATTTTGTACAGTTTTGGAATAAACTATTCCGTTATGTTATTTCTTTAATTCATCTCTCTTTTTACAACTTCCATTAATTGAATGTTGGGCCTCCTGAATTGATTCTCTTTTTTTATCCCCCACATTTCTCTCTCTTTTCTTGTACTTTAGGGGAAAATTTCTCTGCTTTTTGTCTTAACCTTTTTTTGAATGTTTTATCGCATTAATCATATTTTCAGATTCTAAAAGCTCACCATCTTCTTTGTTTTCTTTTCATAGTGTCCTTTATAAATGTAAGATCTCAAAACTCTCAGGATGTCATTTAGGAGTTTTTGCTTTAAGTTCCCTTCTGTTTTCTGATCTTTGTTTGCAGTTGAGTCCCCTTTTTGCTTAGTACTCTGTTTGCATTTAAGAATTAGACAATGTTTAGAAGCTCTGTGCACAGAAGTGGTTCGTTATTGCTGGCTTCCCTCTAGGATGAGGAGGTGGGTAGTTGGCCCTTCTGGGTGAAGGACTGGGGACTTAGGGAGTAGACACTCTGTCACCCTAGAGCTTCCCAGGCAGTTGTATTTTTTGAAAGGTTTCGCCAGGGATAAATGCTTGGCTTTTGTGCAGCATACTAAGGGTGAAGTTGGGGAGAGATTGGAGGTAGACACTGAATGGTCTGTATACAGTCAGTCAGTTCATTTTTCTCTTTTCAGGTCTATGTCTGTGTCATTCTAATTTTCCTTTTTCCTGGCTATTGATATTCTGGAACCTTGAGGTATTTTCTTCCTACCCTCTCCATCTCCTCTCTCAGGTCTTGCCCTGGCTAATTTTTAAATTTTTTATAGAGACAGTGTCTCAGTTTGTTTCTCAGGATGGTCTTGAACTCCGGGCCTCAAATGATCCTCCCACCTTGGCCTCTCAAAATGCTGGGATTACAGGCGTGGGCCACTGCGCTTGGCCAGTCTTGGGGTGTTTTCTAGGGCAGAATAACTTTCTTGGCTGTACCCCTGTCTCTTTGTATGCTGGGCTGTTATTCTTTTATACTTCTTCATTACTTAATGTGCTTTCTGCCTCCCCAAAGTTGATTCAGTTTCTGGTTTGCTGATGCCCCTCTTCCCACTCTCTTTACCAGTGTACATTTCTGTTTTTATTAATTCCTTCCTTGACATTTTCATGGGGAATCTGAAATTTTGTGGTCATCTTGATTGATTCAGGAGCCTCAGAATATTATTATTTGTTACCTAGTAAGCTTCAGTTAAATGACAAACTGTATTTTTGTTGTTCATAATTATCCTAGTTTATAGTGTATAGAGAAGAACCTTTTATCGGGAAATAAATATGTTCCTTTAGTAATTGTTCAAAAGTAAAGCCTTTCATGTTTACTGGAAAATATGTTGACACTGACTTTTTAACAAAAACATACATGACAGTTTATAAACGTGCAGTTAAAAACTTTTCATAAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGAGGTCAGGAGTTTGATACCAGCCTGGCCAACATGGTGAAACCCTGTCTTGACAAAAATACAAAAATTAGCCAGGTGTGGTAGTGCACACCTGTAGTCCCAGCTTCTTGGGAGCCTGAGTCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGACTGTACCACCGCACTCCAGCCTGGGTGACAGAAGGAGATGCTCTCAAAAAAAAAATAATAAAAATAAAATCTTTTCATAAAGCATTTATCACCATTTGTACCTTATTATTTGCTTATTTGTAGGGAGGAGTAGAGAGACATATGGGTCTTATACTTGAGGACATAACCTATTATTGTTGTATTGAAGTTTTATAGTCTTAATTTGGTGTGCAACTTAATATGTTTGCTTTGTTTGATTAATCATGCCTATTTATTGCTCTGTTCCCAGTTAGAATTAAAGCCTTTTGAAGTTTATCATTGTATTTCTAGCACTTAGCACGGTGTCTTTAGTGTGTGTCTCTGCTCTCCCAGATAAAAATATATATTTTTTCCTGTTTTGAGCTTGAAACTTTTACTTACTCTGATGACCTTTTTCTTTAGTTAAATGCTTGTTATCCTCACTAAAAGACATTTAACACTTCAAAAAAGGTTTTATTGTGTCTGATGTAGTTATAAATTTCCCTCGTGTATTTCCTTTTCCTTCTTTCCCAACCCCTGCCAATTTCTTTTTATTTTTATAGGTTGTCACCAAAATATATTGAATTCCCTCAGTATACTTTTAAAGTAGTTGTGATGTTTATATTTAGTAATTCTAAAAGCATGAAAAGGATTTTATACCTTTTTATACTTTGTAGGAGTGTTATATTTTATAAAGATAATATTGGAATTACAAGATGTGTAAATTACCATTGATTATTTACAGGATGAGAAAGTATTTTTTTACAGGATGAGAAAATATTTTTAAGTGCCAGATTTAAAAAATTGTAAGCATTTTTTTAAGTCTTTTGGGCAATTGGCGTATTTTGTTTTTATCAGACACTAAAATTGTGGTATAGTTTAAAAGTTAAAAATTTTGGTAGTTATGAAATTACCCCATCTAGCCTTTGTTGAACTGCTTTTTAAAATCCATTACTGAGCTTTTGAAATGTGAGACAGGGTAACAAACACAAGAAGCCATGTTTGCTCCTTTCTGCTTGCCAGCATAATTTGACAAATCCCCCGACTCTATGACAATGTGCAGCTCTCTGGAGGAATGCCTTGAAGACAAAACAGAGGAGAGCACAGAGTCCCCCATGTCTCTTCCCTGAGTCACTACATTCCTTAAAAGATAAATGAGCCCAGCCTTGCCTTTTCTTACCTGAGATAACGTCCAGTGGGGTTAGTGATCATGTTTCTGCAATCCGTAACCGAATGCACTTTAGAAATCTATAACCAGATGTACTCTTAAACCCAGACCTTGAGGTGATTCTGCTTTAATGTAACTTCTGTTTGACGTGATTTTGCACATACTAAACCTCTACCACCTGTATGTACGCAGCGGGCTGAAACGCTGCTTGGGAGTGGTCTTACAGATTGCCCTGTAGCTCCCAGGCCATAGGCCTTAGTCTGTAGTCCTCAGTAAGACTTCTGAGTAAAGCTACTTCAATTCTTTAAAAATTTGACTTTATTCTTTAGTCAACAGAAACCAGTTAATCACACTGCATCCCAATTATTTCCTTATAGATATCTGAGCTGCATGAGGATTTTTAATTTTTGTGTCCTTTAGGCACTCAAAGATTATTTGTTAAATAAATAAGTGAAATGGTGTTGACTTAAAAATCAATTCTAAGCATGGTCAGCTTTCTAATCTCTGTTACCTTGTTATTTGCAG
Seq C2 exon
GTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCCCATGATGGGCAGATGCTAGTCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-WDSUB1:NM_001128212:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(45.8=68.8)
A:
NA
C2:
PF0040027=WD40=PU(71.8=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)