HsaEX0071444 @ hg19
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160116321-160132149:-
Coord C1 exon
chr2:160132057-160132149
Coord A exon
chr2:160128213-160128306
Coord C2 exon
chr2:160116321-160116354
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTACCTTGTTATTTGCAGGTT
3' ss Score
9.88
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGGAGAACAAGGTCTTCAGTTTTTTCGACTGGCATCATGTGGTCAGGATTGCCAAGTCAAAATTTGGATTGTTTCTTTTACCCATATCTTAG
Seq A exon
GTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCCCATGATGGGCAGATGCTAGTCTCAGG
Seq C2 exon
GTCAGTGGATAAGTCTGTCATAGTATATGATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151_MULTIEX1-3/8=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(45.8=68.8)
A:
PF0040027=WD40=PU(71.8=87.5)
C2:
PF0040027=WD40=PD(25.6=83.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAACAAGGTCTTCAGTT
R:
ATACTATGACAGACTTATCCACTGAC
Band lengths:
119-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)