HsaEX0071444 @ hg38
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159256196-159275638:-
Coord C1 exon
chr2:159275546-159275638
Coord A exon
chr2:159271702-159271795
Coord C2 exon
chr2:159256196-159256375
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTACCTTGTTATTTGCAGGTT
3' ss Score
9.88
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGGAGAACAAGGTCTTCAGTTTTTTCGACTGGCATCATGTGGTCAGGATTGCCAAGTCAAAATTTGGATTGTTTCTTTTACCCATATCTTAG
Seq A exon
GTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCCCATGATGGGCAGATGCTAGTCTCAGG
Seq C2 exon
CAAGGCGCACAGAACATCAGCTGAAGCAATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151_MULTIEX1-4/13=3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(45.8=68.8)
A:
PF0040027=WD40=PU(71.8=87.5)
C2:
PF0053625=SAM_1=PU(96.0=78.7),PF0456410=U-box=PU(5.5=4.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAACAAGGTCTTCAGTTT
R:
TGTGCACAAAGCCATGTTGAG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development