MmuEX0052111 @ mm10
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59864302-59874328:-
Coord C1 exon
chr2:59874239-59874328
Coord A exon
chr2:59873216-59873309
Coord C2 exon
chr2:59864302-59864335
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCACCTTGTTAATTACAGGCT
3' ss Score
7.23
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCGGAGAAGGCCTCCAGTCTTACCAGTTGGCGTCATGTGGTCAAGACTGTGAAATCAAACTCTGGGCTGTTACTATTACCCGTGTCTTAG
Seq A exon
GCTTTGAATTAAAATATAAAAGCACACTAAGTGGGCACTGCGCCCCTGTTCTGGCCTGTGCTTTTTCACATGATGGAAAGATGCTTGCATCGGG
Seq C2 exon
GTCAGTGGATAAATCTGTCATCATACATGGTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(45.8=71.0)
A:
PF0040027=WD40=PU(73.7=87.5)
C2:
PF0040027=WD40=PD(23.7=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTCCAGTCTTACCAGTT
R:
ACCATGTATGATGACAGATTTATCCA
Band lengths:
114-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types