HsaINT0182797 @ hg38
Intron Retention
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159257945-159259843:-
Coord C1 exon
chr2:159259810-159259843
Coord A exon
chr2:159257986-159259809
Coord C2 exon
chr2:159257945-159257985
Length
1824 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTGTTTTTATTGTTTTTCAGAAT
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTCAGTGGATAAGTCTGTCATAGTATATGATACT
Seq A exon
GTAAGTATTTAAAAATCTTGTGGTGATCTATGAAAGTTATGTTTATTAGACTACTGAACTTCAAGTTAGGCCTGGTAGAAAAAGTATATATTTTTTCTGTTTAGTATGACTAAGAACATAAATATTTTCACAAATGCTAAAATAGTTACGCAAGTAAGATATTGGTTCTGCAACAAGCCCTTAAATATTTCAGTAATGATTTTAAGATGGATAGATTTTAAATGTGATCATAAACTATACATATTTAAAGAGCACCAGTGTTCAAAACATCACATACAATCAATTATTAAACTTTTACACCAGGCTTCCATAATAGCAAAGGATGAATGTTTACCCTAGGGTTTTTGGTGAATATGGTTGAAAGTGACCTACCATTCTTAGAGTCCTGGCTGGATTTAGGGAGAGGCATAAGAAAGGATAGGTTATCATGGACTTGGAAAATGGGAGTTTTTTACTGATCCATGTGTGGGTAAAGACCAAGTTGTGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCATGTCAGAAGGCTGAAGCAGGCAGATGGCTTGAGTCCAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACCAAAAATACAAAAACTTAGCTGACCGTGGTGGCGCGTCCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAAGAGGATGGCTTGAACCCCGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAATAAAGTAGTTGAAAAAAATATTGTCCAAAAGAAGAAAATGTTGAGTGGAGCCTCCTAATGCTGTAGCTATGCCAGCAAATAAATGGAGATATAAGTAATCAAAGGGTAGCGAGTTAAGCAAGTGATGTAAGCTAGTCTTCCACACAGAAGTTCGAGTCACTGAGTGTTCTGGCAGGAAATGGGAAAGAATACTCAAGCTAGGTGAGGTAAATCTTTAATATTTCTCATGAACGTTTCATGAGATTTTACATTCTCAAAAACAATTATAACACTAAATTGTCTCTGTAAAATATGTATGAGTCCCACTTAAATACACCTAAAATGTTAGATGGACACCTTAGTGTACTCTAAGGGACTAATTTATTTATTTGTTTTTTTGAGACAGACTCTTGCTCCTTTGCCCAGGCCGTAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGACTACAGGCACGTGCCACCATGCCAGCTAATATTTTATATTTTTAATAGGGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCACCTGCCTCGGCCTCCCGACATGCTGGGATTATAGGTGTGAGCCACTGCACCCGGCCAAGGGACTAATTTCTACTCACTGGTCCTGCAATGTATACAAGTCAAATGCCATAGTCAAAAATATGAATTATTTCAGGTAATAGATGTTTAGGTTACTATTAGTAGGTTCAAACAGATGAGCAAATGCCAAGGGTCTACTGTACTAAAAATTTCTAAGGAGGTGGCTAGCAGACAATAATGCCGATAATTGACAAAAAGTGAAGTAAGTACCTGAGAATGCTGTTACAGATGCTGTTTCTGCTATTCATTGAGTAAAGTTTCAACTTATGTTAGTTACTAATAAATATTAATATATCCACTTAGTATACAACCCATTTATGTCAAATGAGTCTTCATCAGTAACTTTACTCTTACTTGAGTAAATTTAAAGCTGTTTTTATTGTTTTTCAG
Seq C2 exon
AATACTGAGAATATACTTCACACATTGACTCAGCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151:ENST00000359774:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(25.6=83.3)
A:
NA
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains