HsaINT0182797 @ hg19
Intron Retention
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160114456-160116354:-
Coord C1 exon
chr2:160116321-160116354
Coord A exon
chr2:160114497-160116320
Coord C2 exon
chr2:160114456-160114496
Length
1824 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTGTTTTTATTGTTTTTCAGAAT
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTCAGTGGATAAGTCTGTCATAGTATATGATACT
Seq A exon
GTAAGTATTTAAAAATCTTGTGGTGATCTATGAAAGTTATGTTTATTAGACTACTGAACTTCAAGTTAGGCCTGGTAGAAAAAGTATATATTTTTTCTGTTTAGTATGACTAAGAACATAAATATTTTCACAAATGCTAAAATAGTTACGCAAGTAAGATATTGGTTCTGCAACAAGCCCTTAAATATTTCAGTAATGATTTTAAGATGGATAGATTTTAAATGTGATCATAAACTATACATATTTAAAGAGCACCAGTGTTCAAAACATCACATACAATCAATTATTAAACTTTTACACCAGGCTTCCATAATAGCAAAGGATGAATGTTTACCCTAGGGTTTTTGGTGAATATGGTTGAAAGTGACCTACCATTCTTAGAGTCCTGGCTGGATTTAGGGAGAGGCATAAGAAAGGATAGGTTATCATGGACTTGGAAAATGGGAGTTTTTTACTGATCCATGTGTGGGTAAAGACCAAGTTGTGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCATGTCAGAAGGCTGAAGCAGGCAGATGGCTTGAGTCCAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACCAAAAATACAAAAACTTAGCTGACCGTGGTGGCGCGTCCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAAGAGGATGGCTTGAACCCCGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAATAAAGTAGTTGAAAAAAATATTGTCCAAAAGAAGAAAATGTTGAGTGGAGCCTCCTAATGCTGTAGCTATGCCAGCAAATAAATGGAGATATAAGTAATCAAAGGGTAGCGAGTTAAGCAAGTGATGTAAGCTAGTCTTCCACACAGAAGTTCGAGTCACTGAGTGTTCTGGCAGGAAATGGGAAAGAATACTCAAGCTAGGTGAGGTAAATCTTTAATATTTCTCATGAACGTTTCATGAGATTTTACATTCTCAAAAACAATTATAACACTAAATTGTCTCTGTAAAATATGTATGAGTCCCACTTAAATACACCTAAAATGTTAGATGGACACCTTAGTGTACTCTAAGGGACTAATTTATTTATTTGTTTTTTTGAGACAGACTCTTGCTCCTTTGCCCAGGCCGTAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGACTACAGGCACGTGCCACCATGCCAGCTAATATTTTATATTTTTAATAGGGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCACCTGCCTCGGCCTCCCGACATGCTGGGATTATAGGTGTGAGCCACTGCACCCGGCCAAGGGACTAATTTCTACTCACTGGTCCTGCAATGTATACAAGTCAAATGCCATAGTCAAAAATATGAATTATTTCAGGTAATAGATGTTTAGGTTACTATTAGTAGGTTCAAACAGATGAGCAAATGCCAAGGGTCTACTGTACTAAAAATTTCTAAGGAGGTGGCTAGCAGACAATAATGCCGATAATTGACAAAAAGTGAAGTAAGTACCTGAGAATGCTGTTACAGATGCTGTTTCTGCTATTCATTGAGTAAAGTTTCAACTTATGTTAGTTACTAATAAATATTAATATATCCACTTAGTATACAACCCATTTATGTCAAATGAGTCTTCATCAGTAACTTTACTCTTACTTGAGTAAATTTAAAGCTGTTTTTATTGTTTTTCAG
Seq C2 exon
AATACTGAGAATATACTTCACACATTGACTCAGCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-WDSUB1:NM_001128212:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(25.6=83.3)
A:
NA
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)