BtaINT0162054 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37196669-37198017:+
Coord C1 exon
chr2:37196669-37196702
Coord A exon
chr2:37196703-37197976
Coord C2 exon
chr2:37197977-37198017
Length
1274 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTGTTCTGTTATTTTTTCAGAAT
3' ss Score
10.82
Exon sequences
Seq C1 exon
ATCAGTGGATAAGTCAGTTATAGTGTATGATACT
Seq A exon
GTAAGTACTTCACATCTTGTGTGATCTTTGTAAATTACATTTGCTTGTTAGGCTGCTGAATTTCAAGTTGAGTTAGGCAGGATAAGGAAAATGTGTATATATATTTTTTTGTTTAGGGTGCCTTAAAAGATAATATGTACATTTCAGAAATGCTAAAATAGTTATGTAAGTAAGGTATTGGTTCTGGGTCAAGCCCTGAAATATTTCAATAATGGTTTTAAGATAGATATTTTCTGATAAAAGTAAATACCAATTTAAAGAGCACCAGTATCCAAAAAATCACTTTAAATCAATTATTCTTAAACTCTTACACCAGGATTTCATAACAACAAAGGATTATTTACTGGAGGGTAAGACTATACTTCTAGGTATCATTTCTAATAGTTTGTTACTGTATATTGGAGGGTTTTGGTAGGGCATAGCTGAAAGCTGAAAGTGACCCACTGCTTTAGAGTTGCAGCTGGATTTAGAGACTAGTATAAGGAAGAGTAGGTTATAATGGATTTGGAGAAATGGGACTTTTTGTTAGATGCATGTTACTAAAGACCGGGTGGAAGAAAATGAATGTTTAATATACTGTGAAAATATTCTCTGAGAGAAATCAGTGTTACGTGGACCCTTACAGTGGTTGAATTTAGGTTGTGGCTATGCCAGCAAATGAAATAGAGATGTGAATCATCAAAGTGAGTGTGTGGCAAGTAAGGAAGCTAATAAGCTAGTCCTGCTCATGGAAGTTCCAATCACTGAGAGTTCTGGCAGGAAATGGGAAAGAGTACTCAAATGTGAAATAGATCCTTACTGTTTCTCAGGAAGCTTTCATGAAAAGTTTCACAGAAACAGCTAAAACATTAAATTTCCTCCATAAAATATGTATATAAATACATCTAGATACTGGATTGTCAGCTAAGTGCACTCAGAATTGAAGTGATTAATTTCTACTCACTGGTCTGCAGTGGGTACAAGTCAAATGCCCTAACAAAAATACAAATTATTTCATGGTTACTGTTAGTTAAGACAAATCAGCCAGGACTATATTAACCTAAAAATTTTAGCAGACAGCACTAGTAATAATTGAGAAAGAATAAAATAAGTACTTGATGATATTAGTTATAAATGCTATTATCTATTCATTGGATAAGTTTCAGCTTATATTAATGACTCAATATTATTGGAATACATAGAATATATAAACCATTCAGGTCAAGCAAGACTTTGTTAGTAACTTGATTCTTGCCTGAGTAAATATAAAGCTGTTTGTTCTGTTATTTTTTCAG
Seq C2 exon
AATACTGAGAATATACTTCACACCCTGACTCAGCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184:ENSBTAT00000064632:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(25.6=83.3)
A:
NA
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]