GgaINT0048537 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38173814-38175459:-
Coord C1 exon
chr7:38175426-38175459
Coord A exon
chr7:38173855-38175425
Coord C2 exon
chr7:38173814-38173854
Length
1571 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CAAATGTTCTTTTTTTACAGAAT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTCTGTGGACAAGTGTGTCATAATATATGAGACT
Seq A exon
GTAAGTATGGTGTAGTTGTAAGGTTCTTCATGATCATTCATTTGGCTGTTGTCTTTATTAGCACCGCTTCTGCAATATCCTGACAAGATAAAGAGTATATTATGGAATAGGAACTATGAAACCCCCTATTTTTATTTTTTAATCTTCAGTAAGTGTAACTTGAGGTAAAATATCTCCTGAGAATCAGTCAATCTCTCTCATTTTTAATTTTCATTTATTTGAGTGTTTTGTTATTTGATTTCTTTACGCTGCTCTGCAGGACAGTATTATTTAGTGAATCCTATGCTTGTATGTTCTTACTGAAGTGGAGGGAGTTTTGCTAATGGTAAATTTTATTCTAGCGTTCACAGCAAGAAGAATTATACTTTTTGGCATAAAAGGAGGGACAGTGATCACAGAAATCCTTTACTAATTGTATATAAAGCGCACATTAAATAGAAGCATAAGAAATAATTCAAGACAAAAATTACATTAAATACAGTGACCTTTCTTTAAAAGCATCCTCTTTAGGTGTTTTGTGTAATACTGTTATTATATCGTTTGAGGTTCACCTAGCAGTGGTATTTACCTTTTACAATTTTATCATATTGAAGATAATGATTTTGCTGAAAATGGCAGATGAACAGATATTAAGCTTCTCTGCACATACTGCTGTATTGATACAGATTTTCAATTAGGGCTGCATGTTTTTCACCAAAGTGACTAATCTGATACCTTCACAGCTTTGGCCCAGTTGTATCAGTAGTTTGATGCTTAGATCCCCTGGAGGAATGGCACATCAATGAAATGAAAAATGCAGGAAACTGCAGCATAAATGTCTCTTAATGCTGTTTGTCAGATTGTTAGCCTGAGATTTTTAACATAAGGTACAATAAATTTTTTAGAAGTTCTGTTGCCATTATTAAGGCTGAGGGGGGTTAGTTCTATAAATCCTGGGGGAGAGACATTTAGGCCTAAAACAGGGCACTTTCCTCATGCCGAGTAGTTGAAGAAAACTAGATCAGTTAGTATCTCAGAATAACTTTGCTCTTCATCTTTTAATTCTGTCTGTACCTGTCAAAGAAATACTACCTTTAATTGTAAGGAAAGTCTCTCAAATCATATGTTAAAACTGGAAATTCAGGGACTCGTTTTTAGTAGCATCTAGTATACAAATATACAAACCTCTGATGTAATCCTCAGTAAATTGTTAAAGACTGTAGTATGAAGTCTGCTTCAATTTCAGTTACCACTTCAGGTCATTTTTAATCCTAGATTTGTAGAAGAAATATTTTTATCCACACGAACAATTAGCCAATATGGGTATAATTAATTCAGTTGATATTTCTACTACTTTTATGGTGAAGGGTAGCCTTTTGCCAGTGAACTGAATAGAGGGCCTCACATAGGAAAGCCAAGATACATATCTGACTGTGCTGCCCATTGGTTTAGGCAAGGTCAGATACCTACTCTGAAGTAAGTTCTGTCATATTCAAAGAAGAAGTATTATTCTTATCTTTAAAAGTCTGTGTACAAATGAGTGAATGTTTTATTCTTTAAGATTTAAAGTCACAAATGTTCTTTTTTTACAG
Seq C2 exon
AATACTGGCAATATCCTTCATACTTTGTCTCAGCATACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(26.3=83.3)
A:
NA
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]