MmuINT0175905 @ mm9
Intron Retention
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59700874-59702392:-
Coord C1 exon
chr2:59702359-59702392
Coord A exon
chr2:59700915-59702358
Coord C2 exon
chr2:59700874-59700914
Length
1444 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
3' ss Seq
GTTACTCTGTTGTCTTTCAGGGC
3' ss Score
11.13
Exon sequences
Seq C1 exon
GTCAGTGGATAAATCTGTCATCATACATGGTATC
Seq A exon
GTAAGTACTTCATATCTTCTATGTGACCTATATAAATTGTTTATGTGACCACTGCACTTCAGATTTATTTAAAAATATATATTTATTTTTATATAGATATTTATGGTGCCCAAGAATTATCATATACATTCTCACAATGCTGAAATAGTAAGATAACTTGGAAAAACCTTAAATATTTCAATAATGTCTTTATGATGGGTGGAAGTTTAGATCTAACAAGAGGGAACACAGAGTCAGAGAGCACCAGTGTCCAAACAGTCATCATAGGTGGCTTCCATACAGCAGGGTTGGCTGAATGTGGCCTGCTGATCGTTCTCAGGGTACAGGTGGGTTTAGGGACCTGCATATGCGAGTAAGTCACCATAGCCTTGGACAAATATGAGGTTGGGGCAGATCTATATGAGGAAATGCTGAATCGCATGAATTTAAATAAAAATGGAAGTTTTACATCTCACCAAAAGACTAGTTGGTGAGAATGATCTTTGAGAGCAATTCCTTGCCTAGTACATCATTGCCTAGGTTCAGGCATCAGCCAAGCCAGCCAGTTAATAGAGGCATAAGTCGGCAGAGCGTGGTATCAACCGAAGATTAGTTACCCACGCAGGAACTAAAGTCATATGATGCTCATGCAAAAATTGGGAACAAACACTCAAGGAAACAGAGCTGTGGTATTTCCTACCAGCTTGTTATGAGACAGTTTATATTCACAAATAGTTATAACATTGCTTTTCATCTATAAAACATGAGCTACTCCTCACTAAATACACCTGTCCTTACTATTTAATCTTGGAAGAGCAACCTCAGTTGAGAAAATGCTTCCATCATATTGCCTGTAGGCAAGTCTGTCAGACATTTCTCTTAATTATGCCTGTGAGAAGCCACCCACCCTGAGGCCATGGTACTGAAAGCGAGCAGGCAGAGCCAGCCGTGGAGAGCAGGCCAGAAACTGCAGGCCTCCTCGGCCTCTCCTGCCTCAGTTCCTGCTCTGACATACCTCTGTGGTAGACCGTGCTTTGGAAGTGTAAGCAAAATAAACCCTTTTCTCCCCACGTTGCTTTTAGAAACGGTGTTTTATTTATCACGATAGAACCCCTAATGAGGACAATACCTGTACCTCGATGGCTGCCTATGTGTAGTCGGAGTGTCAGCGACTTTCATTTGCTGACCCTGCAGTACATATAGATCAGTTATATCAGTAGGAATACTCGGTACTTTATTATGCAATTGGGTTTCTATTAAAATTCTTGTCCGAATTGGCAACTGGCAGGGGTTCCTGTATAGAAAGCTCTAAAGCCTTAGTTAGGGATGTCAGCTCTCCTGTTGTCTCTAAGTTAGATTTGACAAGTTAGTTGCTAGTAATGTCCTCAGCTTGTGGATCCTGGAAGTGAGGCGCCATCCCTAGCCTGTCTCCTGTCCAAGTAACAGTTACTCTGTTGTCTTTCAG
Seq C2 exon
GGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-Wdsub1:NM_001159636:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(23.7=75.0)
A:
NA
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: