HsaEX0071445 @ hg38
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159256196-159271795:-
Coord C1 exon
chr2:159271702-159271795
Coord A exon
chr2:159259810-159259843
Coord C2 exon
chr2:159256196-159256375
Length
34 bp
Sequences
Splice sites
3' ss Seq
ATAATTTATTTTCTTTTAAGGTC
3' ss Score
9.33
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCCCATGATGGGCAGATGCTAGTCTCAGG
Seq A exon
GTCAGTGGATAAGTCTGTCATAGTATATGATACT
Seq C2 exon
CAAGGCGCACAGAACATCAGCTGAAGCAATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151_MULTIEX1-5/13=4-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(71.8=87.5)
A:
PF0040027=WD40=PD(25.6=83.3)
C2:
PF0053625=SAM_1=PU(96.0=78.7),PF0456410=U-box=PU(5.5=4.9)
Main Skipping Isoform:
ENST00000358147fB7832
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACACTGAGTGGGCACTGT
R:
CCTCCTCTGACCAATCTTCGG
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development