HsaINT0182799 @ hg38
Intron Retention
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159256196-159257864:-
Coord C1 exon
chr2:159257758-159257864
Coord A exon
chr2:159256376-159257757
Coord C2 exon
chr2:159256196-159256375
Length
1382 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACTTGTTTGTTTATTTTAAGCAA
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTATGTCACAACTTGTGCTTTTGCACCTAATACCCTTTTACTTGCTACTGGTTCAATGGACAAAACAGTGAACATCTGGCAATTTGACCTGGAAACACTTTGCCAAG
Seq A exon
GTTAGTAAGGACATCATTTTTCACTCATTTCAACCCCACTCACCATTAGGGTCAGAAAGTTAGTAAATCGGGCTGGGCACCGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGTATCACTTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAGTAGCTCAGCATGATGGTGCATGCTTATAATCCCCGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTACAGTGACCTGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAGTTAGTAAATCATTTGACAGGTTATTCACATTGCTTTTATCAATATAAAGTATACATCCAAATTTAATGTCATTTAAAAATAGTTTGGCCTGGCATGGTGGCTCACACTTATAATCCCAGCACTTTGGGAGGCCGAGGTGGATGGATTGCGTGAGCCCAGGAGTCTGAGATTAGCTTGGGCAACATGGTGAAACCCCATCTCTACAAAAAAGACAAAAATTAGCCACACATGGGGGTGTGCACTTGTGGCCCCAGCTACTTGGGATGCTGAGGTGGGAAGGATCACCTGAGCCCAGGAGGTCATGAGGCTGCAGTGAGCTGAGAACACGCCACTGTACTTCAGCCTGGGCAAGGGAGTGAGAACTCATCTCTAAAATAATAATAATAATTTTACAGAAGCCAGTGTTGAAGTGGCTGGGCTGTGTTAAAGCTGTTGGTAAATGCTTTCAGTGCACATTCATGTGTCCCACTCCTCCCATGGTTTCTAAGTTATTTGTTTATACTCCATACTAATTTTTCAGGTAAATATAACCTCAGGACAAAATCGAAATTATCGTTGTATTTTGTTGGTTTTATTTTGGCATCAAGCGACATTGGCACATAATTTAGGAGTTTTATTTTTATCACTGTCAGAATTATCTAAATAGTGGTGCTGATATGCAGATGATGGAGCAAATAGAATACCTTTGCTGGTATGAATTTTATATAATAAAAAATTGTTTTCCTGATGTGAAAAAGAAAATGATCCAAAAGCAAGTTAAAGTGGTAAAACAATTTTTTTTTTTTTTTTGAGACTGGTCTCCCTATGTTACTTAGGCCGGTCTTGAACTCCTGACTTCAAGTGATCCTCCTGCCTCAGCCACTTGAGAAGCTAGGATTATAGGCATGAGCCACTGTACCTAGCTATAAAACACAGATTTAAGGAAATTTCATTTACTTTTAATTCAAAGTGAGAATGTTTATAAAGGAAATACTTTTTTGTTATCTCACTTACTTGTTTGTTTATTTTAAG
Seq C2 exon
CAAGGCGCACAGAACATCAGCTGAAGCAATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151:ENST00000359774:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=73.0)
A:
NA
C2:
PF0053625=SAM_1=PU(96.0=78.7),PF0456410=U-box=PU(5.5=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGCACCTAATACCCTTT
R:
CAATTTTCAAATCATCAGCCAGACT
Band lengths:
271-1653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains