HsaEX0071447 @ hg38
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159256196-159257985:-
Coord C1 exon
chr2:159257945-159257985
Coord A exon
chr2:159257758-159257796
Coord C2 exon
chr2:159256196-159256375
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGGTTCAATGGACAAAACAGTGA
3' ss Score
-2.93
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AATACTGAGAATATACTTCACACATTGACTCAGCACACCAG
Seq A exon
TGAACATCTGGCAATTTGACCTGGAAACACTTTGCCAAG
Seq C2 exon
CAAGGCGCACAGAACATCAGCTGAAGCAATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-'16-12,'16-11,17-12
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.2=78.6)
A:
NO
C2:
PF0053625=SAM_1=PU(96.0=78.7),PF0456410=U-box=PU(5.5=4.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACACATTGACTCAGCACA
R:
AAATCTTGTGCACAAAGCCATGT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development