MmuEX0052110 @ mm9
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59699618-59700914:-
Coord C1 exon
chr2:59700874-59700914
Coord A exon
chr2:59700677-59700783
Coord C2 exon
chr2:59699618-59699797
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCCATCTGTCTATTACGTAGGTA
3' ss Score
7.12
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACCAG
Seq A exon
GTATGTTACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCAATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
Seq C2 exon
CAGGAAGCATGAACGACCCGCTGAAACATTTCACTGAAGAATGGTCAGAGGAGGATGTCTCCGTGTGGCTTCGTGCTCAAGGCTTGGAAGACCTCGTCGGTATTTTCAGGGCAAACAACATCGATGGGAAAGAACTATTGCATCTCACAAAGGAAAGTCTGGCTGGTGATTTGAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.2=78.6)
A:
PF0040027=WD40=PD(69.2=73.0)
C2:
PF0764712=SAM_2=PU(74.2=81.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCAGAGTGTGCTACA
R:
CGATTTTCAAATCACCAGCCAGAC
Band lengths:
221-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: