DreEX6020963 @ danRer10
Exon Skipping
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11781049-11783573:+
Coord C1 exon
chr6:11781049-11781089
Coord A exon
chr6:11781161-11781267
Coord C2 exon
chr6:11783559-11783573
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGATCACTCTTTTTGGGTAGGTA
3' ss Score
6.9
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GATGAAGGCGTCTTACTTTACACACTTCACCAGCATGACAG
Seq A exon
GTATGTGACTGCCTGTGCATTTTCCCCCACGGCCCCTCTCATCGCCACAGGCTCCATGGACAAAAGCGTCAATATCTGGAGGATGGAGGAAGGCAGCAGTGCACAGG
Seq C2 exon
GCAAATCTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.833
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.2=78.6)
A:
PF0040027=WD40=PD(69.2=73.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]