DreEX6020965 @ danRer10
Exon Skipping
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11777495-11781089:+
Coord C1 exon
chr6:11777495-11777588
Coord A exon
chr6:11780880-11780913
Coord C2 exon
chr6:11781049-11781089
Length
34 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTCTTTCCCCACAGATC
3' ss Score
13.71
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCATTAAGATGCAGCTCGCTCACACTCTGACAGGACAGTCTGCTCCGGTTCTGTCCTGTGCTTACTCTCCTGATGGACAGATGCTGGTGTCTGG
Seq A exon
ATCAGTGGATAAGACCGTCACCGTGTATCAAGCT
Seq C2 exon
GATGAAGGCGTCTTACTTTACACACTTCACCAGCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(71.8=87.5)
A:
PF0040027=WD40=PD(25.6=83.3)
C2:
PF0040027=WD40=PU(28.2=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCACACTCTGACAGGA
R:
TGTCATGCTGGTGAAGTGTGT
Band lengths:
120-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]