MmuEX6101451 @ mm10
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59862817-59873309:-
Coord C1 exon
chr2:59873216-59873309
Coord A exon
chr2:59864302-59864335
Coord C2 exon
chr2:59862817-59862857
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTTTTTTCAGGTC
3' ss Score
13.27
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GCTTTGAATTAAAATATAAAAGCACACTAAGTGGGCACTGCGCCCCTGTTCTGGCCTGTGCTTTTTCACATGATGGAAAGATGCTTGCATCGGG
Seq A exon
GTCAGTGGATAAATCTGTCATCATACATGGTATC
Seq C2 exon
GGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-'11-15,'11-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(73.7=87.5)
A:
PF0040027=WD40=PD(23.7=75.0)
C2:
PF0040027=WD40=PU(28.2=78.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTAAGTGGGCACTGCG
R:
CTGAGTCAGCGTGTGTAGCAC
Band lengths:
105-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types