GgaINT0048801 @ galGal3
Intron Retention
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33587910-33591460:-
Coord C1 exon
chr7:33591336-33591460
Coord A exon
chr7:33588282-33591335
Coord C2 exon
chr7:33587910-33588281
Length
3054 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
TCTTTCTTTTTTTCATACAGGTA
3' ss Score
11.82
Exon sequences
Seq C1 exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
Seq A exon
GTTGGCTGTTCTTAAGGATGCTATTGTTTCAATATCGCCTGGTGGTACTTTTAATGTATATTAAAACATATAAAAAGTTACTCACTGATTTATGACAATAAATTTTATTATATCTCCATATTTTTTTCATAGAGTATTTTTTTTAGCTAAGATTTACTTACTATGAAAAATATGTAGTAAAGCTTCTACTAAAAACATCCGAGCGTTTTAAGGAGAAAGTATAAAATCAAAATACTTCCTATCATTCCTTTTTGGTTTTTTTTCTCCTCAAAGCACCCAAGTCTTAGGAATGAGATGGACCTTGAATTGTGCTTTAGAGAACAGCAATCTCAGGCTGTCTCAGATGTCTGTAGGAAAGCAGTACGTTTTTTCACAGCTAGAAAATCTCAATCTCTGTCTCTCAAATATTTATTTCCTGAGATTCCTTGGTCTTGAGTCCAGCTTTTTTGTGTGGGAATAATTGTAAATAGTTAGATATCATTCATATTTAATTTGTTTTGCAACCGAATAGACAATTATCATATACTGACTGAGAGTTATAGTAGAAATTAATGAATGTTATCCCCCATTAAGAATAATCTTTCTTTTAACTATTTTTTCTGCTAAAATTCTAATTCTGAAGAGACTTTGAAAAGCAAAGATATTTGTGAGAAAGAAACGACAAAAGTTTATCACCTTTGTAAGCAATGTGTATTTGTTTCTGTGAGCTGAATTCTATCAAAAATGATGATTATTTTCTTAGAGCTGCTACCAGATGGAATTTTAAATACATATTCAAAAAACACAGAAAGAATACGCTACTTGAAAAAGATATTTTTAAAGATATTTGTAATAGGAATATACTTTTAGTGTTGGCAACACTCAAAACTTGTTTTAATCACAGCATCACATATCTGATGATCTAGTTTTTATATACATCTTTCCTAAATAACTGCATTAAATATAAAATGTAAAATAAATCTGTATTTTGAAAGAAAACCTATTTAAAAAATCAGTAAAAAAAAATCTTTCCAATTTTTTCTCAAATGAATTTGAATAGTTTTGAGAACAATGAACATATTTGTATTAGTTTTGCTAAGGAGTTCTGCAAGTATTTTCAGTTTTGTAGACATTTTGTGGATAATAAATGTCCACAGAAAAAAAAATGGATGTTATTGCTTTTAACAAGGCTAGAAATAGTTAATGTCTGCTTGCTTGGAAGGGCCTTATGTATAGAATTAAGAAAATGGAGCAATTGGTTAAAAATGCTTCTCTATATGTAATGATTTTTATTGCTAGTTTGACAGATTTGGTTGCATTAGGAATGGGAGAAATGGTTATTGAGACTAAAAAAATTTTTGATGTTAGTTCGAAAAACATAACTGAATGAGTTTTTAATACATTTTTCAAATTTTACTAGGGTACAAATGGTTAATGTCTTTGGGAGGGGCTGTCAGTGAGCCAGGAGGACAAAAGGGAAAAAAACAGGTGAAAAATACTTTTGGAATGTTTTTTTTTCTGTATCACTCTATTATATATTATCTATGTATACTTTTAAGTTTGCTGAACTAGAAGTAGGTAATGATCCTTTAAAAAAAAAAAGGAATTAGCTAGTTTCCTGACCTTTTATTAAAACAAACAAATACAAAAATAAGCAAACAAAACCAAGCAAAGAAAAAAAACCCACATAAACGACCTGTGCTGATTGACAAGTGATCAATGCTTTTTTTTCAAACACCTGTTTTATCCTTTCTGATGAGCCAGCCCTGTTGCAGTGAGGAGATTCTTCTCTTTTAGTTCTATTCTACATGTGTGAAAGGATATGCCCTAATTAATCTGTTTTTACAGCTGGCTGCTTTTACAGATGCTTACAGCTGAACTGTGGAAGCGCTGAAGTTTACAAAGAGAGATTTTAGAAACTTTAGGATCTCTTCCATGTATTTGCCTTTCTCTTCTCAAACTCTCATCCTTCCAAACAGATATTAACTTTTTTCTAGCCTAATAAAGCTTCAAAAGTGTTTTTAAAAAACTACAAGCAAAAATATGTGCAGATAATTCTCCACGTATTTTTGCATGACTACAGTGCAACATTTCTCATAATTTTGTCAAAATTCAACACTGCTAATGTTAACTCATTCCCCATTGCTTTTACTTAGATATATCTTTAGCTTGAAGTGTAGCAGTTAAAAAAATTCAGTCAAGGGTACTTTCAGACACTACATGTTCCCTGACAATGATAATGGCTTTCTACCAGAAACTATTTAAAGTGTGTGGTTTTTTCTCCTTCACTATCTAGAAAACTTTGAGAAATGGGAAAATGACTATACTGAGAGAGCTTAGTTGTTATATGGAAAGTGCTGTCAGAAACAAAAACTAATTTATCTGAACTAACTATAATTGTATTTCATACATAGTCCAAAAAATACGAAGGTAAATAGATCCTAATTATTGACAATTACTGCAATTTTAAATATTGCTTTTAACAAGTGTAGTTTATGTCACTGAAGTTACTAATGTGACAATGATTATTTAATAGTATACCTTGTCAGAGAGTAAGTTTTTAAAGCCAAGTTTTAGAGTAAATTAAAACAAAAATGTCAGGAAACATTTTCATCAAGAACAGAGAACAAAAGGGAACACTTTTGTACCTGTTTTCATTTGATAGAAATTAAGAATGCTACAGTATTGTGATGGTATCCAAATTTGTCTCTGTCAGTAACAGGTGTTTTAAAAAAAAAAAAAATCTTTCAAAACACTTGGAACAACTCGTAATAGTCTCTATCCAAGTCTTTATCTGAACATAGAGGAAACATCTATTTATTTTCTTCTTATAAAGTATGTAATCTTGTGAATTGGAAGAATATTAATTACATTTTCTCATAGATTGTATACTCTAAAATTGGATTTAGTTAATTGTTGAAGTTATATTCTTTACTACTTTGGCCTTTGGTTCAATTGTATTGTAGAAAAAGTTTAAGAGAATTCTTGGAATTCAAAAAAATGACATTTTGATTTACATTAGCTACAGGTAATAGTATAAAACAGATTTTTTTTTTCTTTCTTTTTTTCATACAG
Seq C2 exon
GTACTAATGTTTGTGCCAAGAATAATGGTGGATGTCATCAACTCTGTCTTTATCGAGGAAAAGCACAAAGAACTTGTGCATGTGCACATGGCTATCTTGCAGAAGATGGAATTACCTGCCTAAGACATGAAGGTTACCTCTTATATTCAGGAAGGACAATATTAAAAAGTATACATCTTTCAGATGAAAACAACTTAAATTCACCAGTAAGGCCATATGAAAATCCAGAGTACTTCAAAAATGTGATCGCTCTTGCTTTTGACTACAGCCTGAAAGGAAGAGGTACTAATCGGATATTTTTCAGTGATGCACACTTTGGAAATATACAAGTTATTAAAGACAACTGGGCTGGCAGAAGAGTGCTAATAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407:ENSGALT00000020272:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=28.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]