GgaINT0048801 @ galGal4
Intron Retention
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31472530-31476080:-
Coord C1 exon
chr7:31475956-31476080
Coord A exon
chr7:31472902-31475955
Coord C2 exon
chr7:31472530-31472901
Length
3054 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
TCTTTCTTTTTTTCATACAGGTA
3' ss Score
11.82
Exon sequences
Seq C1 exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
Seq A exon
GTTGGCTGTTCTTAAGGATGCTATTGTTTCAATATCGCCTGGTGGTACTTTTAATGTATATTAAAACATATAAAAAGTTACTCACTGATTTATGACAATAAATTTTATTATATCTCCATATTTTTTTCATAGAGTATTTTTTTTAGCTAAGATTTACTTACTATGAAAAATATGTAGTAAAGCTTCTACTAAAAACATCCGAGCGTTTTAAGGAGAAAGTATAAAATCAAAATACTTCCTATCATTCCTTTTTGGTTTTTTTTCTCCTCAAAGCACCCAAGTCTTAGGAATGAGATGGACCTTGAATTGTGCTTTAGAGAACAGCAATCTCAGGCTGTCTCAGATGTCTGTAGGAAAGCAGTACGTTTTTTCACAGCTAGAAAATCTCAATCTCTGTCTCTCAAATATTTATTTCCTGAGATTCCTTGGTCTTGAGTCCAGCTTTTTTGTGTGGGAATAATTGTAAATAGTTAGATATCATTCATATTTAATTTGTTTTGCAACCGAATAGACAATTATCATATACTGACTGAGAGTTATAGTAGAAATTAATGAATGTTATCCCCCATTAAGAATAATCTTTCTTTTAACTATTTTTTCTGCTAAAATTCTAATTCTGAAGAGACTTTGAAAAGCAAAGATATTTGTGAGAAAGAAACGACAAAAGTTTATCACCTTTGTAAGCAATGTGTATTTGTTTCTGTGAGCTGAATTCTATCAAAAATGATGATTATTTTCTTAGAGCTGCTACCAGATGGAATTTTAAATACATATTCAAAAAACACAGAAAGAATACGCTACTTGAAAAAGATATTTTTAAAGATATTTGTAATAGGAATATACTTTTAGTGTTGGCAACACTCAAAACTTGTTTTAATCACAGCATCACATATCTGATGATCTAGTTTTTATATACATCTTTCCTAAATAACTGCATTAAATATAAAATGTAAAATAAATCTGTATTTTGAAAGAAAACCTATTTAAAAAATCAGTAAAAAAAAATCTTTCCAATTTTTTCTCAAATGAATTTGAATAGTTTTGAGAACAATGAACATATTTGTATTAGTTTTGCTAAGGAGTTCTGCAAGTATTTTCAGTTTTGTAGACATTTTGTGGATAATAAATGTCCACAGAAAAAAAAATGGATGTTATTGCTTTTAACAAGGCTAGAAATAGTTAATGTCTGCTTGCTTGGAAGGGCCTTATGTATAGAATTAAGAAAATGGAGCAATTGGTTAAAAATGCTTCTCTATATGTAATGATTTTTATTGCTAGTTTGACAGATTTGGTTGCATTAGGAATGGGAGAAATGGTTATTGAGACTAAAAAAATTTTTGATGTTAGTTCGAAAAACATAACTGAATGAGTTTTTAATACATTTTTCAAATTTTACTAGGGTACAAATGGTTAATGTCTTTGGGAGGGGCTGTCAGTGAGCCAGGAGGACAAAAGGGAAAAAAACAGGTGAAAAATACTTTTGGAATGTTTTTTTTTCTGTATCACTCTATTATATATTATCTATGTATACTTTTAAGTTTGCTGAACTAGAAGTAGGTAATGATCCTTTAAAAAGGAAAAGGAATTAGCTAGTTTCCTGACCTTTTATTAAAACAAACAAATACAAAAATAAGCAAACAAAACCAAGCAAAGAAAAAAAACCCACATAAACGACCTGTGCTGATTGACAAGTGATCAATGCTTTTTTTTCAAACACCTGTTTTATCCTTTCTGATGAGCCAGCCCTGTTGCAGTGAGGAGATTCTTCTCTTTTAGTTCTATTCTACATGTGTGAAAGGATATGCCCTAATTAATCTGTTTTTACAGCTGGCTGCTTTTACAGATGCTTACAGCTGAACTGTGGAAGCGCTGAAGTTTACAAAGAGAGATTTTAGAAACTTTAGGATCTCTTCCATGTATTTGCCTTTCTCTTCTCAAACTCTCATCCTTCCAAACAGATATTAACTTTTTTCTAGCCTAATAAAGCTTCAAAAGTGTTTTTAAAAAACTACAAGCAAAAATATGTGCAGATAATTCTCCACGTATTTTTGCATGACTACAGTGCAACATTTCTCATAATTTTGTCAAAATTCAACACTGCTAATGTTAACTCATTCCCCATTGCTTTTACTTAGATATATCTTTAGCTTGAAGTGTAGCAGTTAAAAAAATTCAGTCAAGGGTACTTTCAGACACTACATGTTCCCTGACAATGATAATGGCTTTCTACCAGAAACTATTTAAAGTGTGTGGTTTTTTCTCCTTCACTATCTAGAAAACTTTGAGAAATGGGAAAATGACTATACTGAGAGAGCTTAGTTGTTATATGGAAAGTGCTGTCAGAAACAAAAACTAATTTATCTGAACTAACTATAATTGTATTTCATACATAGTCCAAAAAATACGAAGGTAAATAGATCCTAATTATTGACAATTACTGCAATTTTAAATATTGCTTTTAACAAGTGTAGTTTATGTCACTGAAGTTACTAATGTGACAATGATTATTTAATAGTATACCTTGTCAGAGAGTAAGTTTTTAAAGCCAAGTTTTAGAGTAAATTAAAACAAAAATGTCAGGAAACATTTTCATCAAGAACAGAGAACAAAAGGGAACACTTTTGTACCTGTTTTCATTTGATAGAAATTAAGAATGCTACAGTATTGTGATGGTATCCAAATTTGTCTCTGTCAGTAACAGGTGTTTTAAAAAAAAAAAAAATCTTTCAAAACACTTGGAACAACTCGTAATAGTCTCTATCCAAGTCTTTATCTGAACATAGAGGAAACATCTATTTATTTTCTTCTTATAAAGTATGTAATCTTGTGAATTGGAAGAATATTAATTACATTTTCTCATAGATTGTATACTCTAAAATTGGATTTAGTTAATTGTTGAAGTTATATTCTTTACTACTTTGGCCTTTGGTTCAATTGTATTGTAGAAAAAGTTTAAGAGAATTCTTGGAATTCAAAAAAATGACATTTTGATTTACATTAGCTACAGGTAATAGTATAAAACAGATTTTTTTTTTCTTTCTTTTTTTCATACAG
Seq C2 exon
GTACTAATGTTTGTGCCAAGAATAATGGTGGATGTCATCAACTCTGTCTTTATCGAGGAAAAGCACAAAGAACTTGTGCATGTGCACATGGCTATCTTGCAGAAGATGGAATTACCTGCCTAAGACATGAAGGTTACCTCTTATATTCAGGAAGGACAATATTAAAAAGTATACATCTTTCAGATGAAAACAACTTAAATTCACCAGTAAGGCCATATGAAAATCCAGAGTACTTCAAAAATGTGATCGCTCTTGCTTTTGACTACAGCCTGAAAGGAAGAGGTACTAATCGGATATTTTTCAGTGATGCACACTTTGGAAATATACAAGTTATTAAAGACAACTGGGCTGGCAGAAGAGTGCTAATAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407:ENSGALT00000020272:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]