GgaINT0048890 @ galGal4
Intron Retention
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20964206-20972117:-
Coord C1 exon
chr7:20972005-20972117
Coord A exon
chr7:20964386-20972004
Coord C2 exon
chr7:20964206-20964385
Length
7619 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTCTAAAATTGTTTTTTAGGAA
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTAATATGCATCCCTACATTCTGAGGCATGAAGATATTGAAACCTCCAACTTATCTTTTAGCCAGCTCTCTGAAAAACTGAATGTAGCAAAGCGAAGAGAAAGACTCCTAAAG
Seq A exon
GTATGGTCATCTGCAACGTGCTGAGTGTAAGATTACATTTGTTCTGTGATTATACTGTGAGAACCTAAGGACAGGTGTCTTTGAACTGTTCTTCCAAAACAAGATCCTTATCTGAACTGCGTGAGTGTTGTGCCCTGTAGTCTAGTTAGTTGAACTAAGCATCTGTCTTTGAAACTTCCCAGTGTAGTTGTCGTTTGCTCCGGCTCCCTAGAATAATTTTGATTAGAAAGTAGGAATTTGCTTATTTTTTTCTTTACCTGCCCAAACCAGCGGTCAAGAAGGGGTTTCTTCATTCTCTCAGAAGAGTTTTCAGACTACAGCCAGTTTGTGTGTTTTTGCAAGAAGTGGAGAATGTGCACTCAAAGAGTGATGGGGTGTTAAATAAACTACCCATTGCTCTGGAGACACGGATGATTTGTCTGATTTTAAGCAGACAATTTTAATATAGTGTCTCTTTTTCCCTATTCACTGAAATAACACGGAAGTTTTCAGTACAGCCTGTTTAGACTAACAGGAATAGGAATAAATCAGTTCTGTAGAATAGACAGTAAATACTGTGGGTGGATTTTGTATGTTCAGTAAAGACAGTGACAGAGATACAAAGTTGGATTGTTCTTATTCTAAGTCATTCTATTGTGTTTTTGAGAGCTTCCATGTAATGCAGGAATCTCATGATTTAGAGTATGAAGCTCCCTGACAGAGACAGGGAGCTGTAAGGCAGCCTTAAAAAGACCTATAACTGTCATGTCCTGGATTTAAAAATAGTTAATTTCAGAATTTGTTTCCTAAGCTATAGCTATGAACATACTATGCTAAATTCACAGAAATGCAGTTTTCAAATCAGAAATGTTAATTAATAATTGTATTAGATTACTGATGCTTATTTAATTATCTTGAAGGAACCTCCTTTAAAACTAAGCCTTTGCTAACATTTTAAATTTATTATTGTTGAAAATTTATATACATTACTTTTTTAAATAAAAAGGAATCCTTACAGATTTTAACATAGAAAAATATATAATCACAAGCTGCCATTTCTTTCCTAAACTTTACATTTATTTGTAGTACAATGTAGTTGAAGGGTTAATTCTTTGATGGAGCACCTTTGCTTATTTTTGCATTTCTCTGTCTTGAATTGGATAATTATTCAGCTTTACAATTGCATATGGAGATGTGACCAAGGCTAATATTCCATGTTCTTGTTTCTGAGCTCTCCAAGATGGTAGCTTCACTTAGCAACTTAGTTGTATAATGACTGAAAGTGAGGGCTGTGTTATCTACTCTTCTCATATGGGAAAACACTGAGAAATTACGTGATCTATACAGTACATTACAGTCAGTGCATGAGAGTCAGGAGTCATTGTTTCAGGTGTTTTTCTTAATGGAATATGTTATTTCTATTTGTCTGCATTTTGGTTTAGCCAGTTATTATGGTTGCCTCTCAGCCAGTTCATCTGGATTTTGGTTCATCTGTGCCACCAATGGTAAGATTTCTGATAAAACTCCATGCGAAATAAACTATATGTAGTCCCTGCGCACTTATGTCAGGCGCAGTCCCTGTCTTTCTGAACAAATGAAGTACAAATAATAATCATTATGGGCCAGGTTAACGGAAGAAAAAAAAGAGAGAGAGAATTCTTCATGTGGTAAGCAGTCACCCAGTAGAGCTTCATGTTTCCAGGGAAAACTGGGCAACTTCTTGGAAGATAAATCTATTAAGTTAATAAAAACATGGGAACTATGGCTATGAAAATCTGGGAATTTATTAAGGGATGCATCATGAATGCCTCCTCCTTTATTGCATTCTTCTCTAGACATCATCTTTTGACTTCTGTTAGACAAAAAAAAAAAATCTTGCCACTGATTCAGTGTAGTTACCTTGTATCTAATTCAATAAATTGTTGGCCTTTTTTAGGTATTCAAATTTGTAAGTTTATATATTTTATTTGAAAGCCTATATTTTTCTAACCGTATTCCATCCCCATTTTGCTCTAAATCAAATAAATGATGTCTACAAATACTGTCCTCTATTGTATTAAGTCCTTTATTCTGCTTTTCCACTGAAATTTTCAGGCTTGCAAAATGTTCAATTCTGGATAGTAAACTAGGTTTACCCATACCCACTGAAACTGTCTTCTGCTAAGTCCAATATAGTTTCTCTGGAGAACTATAATCTGTCTTCCAGTACAGTTAACAGAAGTGCTGGGTTGATTGTAAGAGGTACATGGCTAGTCCTTAAATTTCAGTTCAAAATGAGGTAGGGATTAACTTTTCTGTCTTCCAGCTTCAAAAACTTGGCCAGACTTGTCCATTTTATCTGTCAAATGTTGTTGCCAGCATGTCGTAAAACGTTTTCCTTGTTCACATTTATCCTCATTGGTGGTCAGTACCAGACCACATACAAAATTACCATATTTCTTCAGTCCCCTGCTTGAGGAGGCCAAAGGCACCTGAATTGCTGGTTTTTCTGAGGCTGTTTTTAGGTACTACCAGGTTCAACTTTATTAAGTAGGAAGAATGTGTCTCTAGTTACTGTACCAGAGTCAAAGCTCTCCAGGAGATATGTCAATTAACCAGTGTCAAGCAAAGCTTCTTCTGTGTGCTATTTTTAGTAGAGTTGGACATACAGTGTCCATAAATCATGAAGCTAAAATCAATACCTGTGGCAAGAAGACGTGCTCATGTTCATATTTTCCTTGGTCAGAAGCTTTAGTATTAAATGCTATGTGGAGCTTGATTATCAGGATTTCCTGTGCAAGCCATTGTGTATCAGGAATGACTGATGCACATAAGATACATATTTTTTCATTCTGCAGTAAATGTTTGTCTTGCAAGCTGTTAGCATAATAAAAAGAACGGCAATGTATGGTAGTCTTCTTTGTGCTCAAAATTGTGGGAATAAAATGACTTAGATATCTAAGAGCAGCTACTATGTCAATCTCATAGAGTCAGTATCACCTTCTCTAGTGTCGCTGTTTCCTGTCTTTGATGCAAAGAAAGCTGTACATTAAGATTTTTATGGTAGTCTATGCATTTAGCTTAGTGTTAAGATGCATTTTGTAACCTTAATTAGACCCTGCTTTGTGATTTATGAAATTAGTGTACTGATAGCCTATTTCCTTATTTCTTTACCTGTTTAGTGTATCTCTGCCCAAAAATAATGAATGTGGTTAAGCTGTTGAAAGTCATTACCAATAATATTCTCTGAAATCACTTAGAGTAGTTTGTAAGCTGAGTAACATTTTCCATTGAAATTATTTGAAAGTTAATTTATCCTAGGAATTCATGGCGGGGAAAAAAAAAGCCATTATAACACACTTCAGGGGAACAGTAAAGGGACCAGTCTTTGCAGCAGTACAGTTCGGGGGCTGTGCTTTGGAGCAGCTCTGCTGGAAAGGATCTGGAATGTTCTTAGACAGTAAGATGAGCATGAGCCAGCAGTGAGCCCCAGAAGCAAAGGAAGGCAGCAGCTTCCTGGGAGCACAGATAGCAAACCCAGGGAAGTGAGTATCTCCCTCTATTCAGCATTCACTGGACTGCATCTGGAATACCATATCCAGCTTGGATGCCTCCCATACAGGAAGGGCAATGAATAAAATAGAGTTCAGCAAAGGACCCAACAAAGTAGTCAGGGGCTTGAGAAGCCCCATAAGAAGAAGATGCAGAAACTGGACTTGTTCAGTGTGGAGAAGAAGTGGCTTTAGAGAAAGCTAATAGCTCTCCATAGAGGTTATCTTCATGGTTGTGCATGGCAAGAGGGCTAGAGACAATAGGCATTTGAAGTGTGAAAGGTTCAAACTGAACACAAGGGAAAACTTTTCACCACAAGGACAGACAGACATTGGAAAAGGTTGTCAAGAAAGGTTGTTCCATCTCCATCCTTCGAGGAATTCAAGACCTGGTCAAACATCATAACTGACTGCTGCTTTGATTAGTAGGTTGATTTGGAGAACCTTTTGAGATCCCTTCCAACTTGAATGTTCTGTGAGATAAACCTCCCCAAAAGAAGTGTCATGGTTTGAAGAGATAATCTTTTCATAGTGAAGATATAACCTCTTTGCTGTGTGCTAATTCAAGCATTCTTAAAAGATATATTGTGCAGCCAAGTACTTAACTGAGCAGGTATCACCTATGTGGCATACCTGTCATGGCACTAACCTAAAACTTAGCACACTTTATAATACCACATTGTTTGCAAAATCCAAACTCTGACAGTATAAGAAACTGTAAGATGATTGGGCTGTGAAGGCTTGTATTACTACAAGATCCCCAAAAGCAATCTCTGGTCTTTTTCCTGGCATGATATCCCAAAGTTGCACAAAAATGGTGACTTAAACCTGATATATTTTCATTGAAACATGTTGAAAGGCTCTTCCAACATTGATTCCCACATAGCTTATCTTCATCTCTTAAAACTTGTCCCTGCTGCCTGCAGGAGAAAATGGAAGAAATGGAAGAAAGCTACTGGCCGTTACTGCAATGCTCCTAGCAGTCCAGAAGCTTTTGAAAGTCCACATTTTTTGGAGCTGTAATAGTTCCAAATGGATAAATGCTGTGTGCAGATCAATGCTATATCACAGGCTCAGTGAAAGAGTTAATTTATTGTCATTAATTTTGTCATTATTATCGTTAAGGGCAAGTGTTGTGTTTCACGTAAGCTTTTTCCAAGGTGTTTGGGTTTCCAAGGAGCTTATTTTCAAAGGAAAATACCAAAGAAGCTGGTATTGTGTGCCATTACTTTGTGGGTGTTTTGTTCTGTTTTGTTTTGTTTTGTTGTTGTTTGTTTTCTGTTTTTGTTTTTTATGGAAATTGAATTTGACCAGGGATTGTTTGGGAACTCAGTGACCAAACAATGGCTCTGCGGTGGCTTGGTGCTTGTGAACTTGCACCATGGGATGTTACTGCCCTCCTATTACTGAAACAGCAAAAATCAGTTCCTCATACCATATCTCATGTTTGTTTTGTGTTGTCTTAGATGACCAGAGCACTCCCTGGTACCTCCTGGTAACTATTTCTGATTTAGTCTGTATTACTCAGGTAGAAGAATAACAGTGTAGCCCTGTTCATATTTAACTGTGGCTAGAGGTGTTAAGTAAACAGGTCATAAGCTGAGCTGCTCTATGCTTTTGTGTTTCTTTCATACACAAAACAATACTGAAGTCTTCTTTGTAGCTATGATTTTATTTCTATTCTCATGCTGCATGATGTTTTTCAGACTTTTGTAGTCTTTAAATAACATAGAAAAGTATATAGTTGTAAAACAATGTCCCGCTTTTGGCTCTGCTTTTTCTTCAAAGTATTTTCACATCTCCTGAAAATGCTTTTATGCATGCCTCCATCTCCTCTTAACAGAAGCTATATTTTTCCCCACATTGATAAATATGATTTCTTTTGTCATTCATCAGATATTTTCTTTATGTGCTCTGAACTTTCTGTGCCTTTAATGTTTTCATGCCTCTTGAAGAAATTAAATATAGCTGCTGTAGCATCAATTATAGACATATTATATTTATATTCTTTAGGATTCATTGGCCTAAAGTCTTCAGACACCTTGTTCTTTTCAGAACAAAAATCTTTCTCATTTTTTCTTCTTTTGCTGCTATTTGATTCACACACTTCCCTGGATTCTTACCTACTATGATGCAGTGTACAGATTCTACATTAGAAGACTATAGAAAGTGTTTGATCTGTCCTGTAAGTTCTATATATTCCTCCAAAAGTGGAATATATTCCCCCAAAAGTGCAAAATGTGGAAGGAAGAGTCATTCAGCCTTAGGAATTAGGAGGTTTGCAATACCTAAAGCAGAAATACCTTATCACTTCAGAGGTGTTTGAATGAATGGATTTGTAATATCTGCAAATTGTGGTGAGAGAGGATTTTTTCTAGGATAGGAACAGCTTACTTTTAGACAATGTTTTGAACCCCCTGAGAAGAAGTTTAATCTGAATCTCTGAGATTCCAGCAAGTCCAGAATTGCTCTGAAGCTCTGACCTTAAGTTTACTGTATAAAGTCACAAGTGATACTAAAGGAAAAACTGTCTTCAATACTATTTTTCTGACTTTATTTAGGTAGGTAGAATAGCTACTTGGCACATAACTGTTGTTTCAGCTGTACATGCACGCATCCATGCTTAACCACCTGATGTGTGTGAGTAGACTAACTATGGATCCATCACTATACGGCTGTTATTGTCTCATTTTGGTTGTCTCACTGATAATATGTCATATCTTATAGTTTAGGTTAACCTTTACCTATCTAATCTCCAAACGGACAACCTCAATCTATTTAGATCCTATTTGTAAAAAAACAAACATTCTTCTCAAAAGGACACTTATTTTCTTCTTTCCTCTTCACCTTGCATGACCTTTTTACAGACTGTTGATGACCTATTATAATATCATCAATAAAGATGTTGAAAAAGACCAGACCCAGCATCAATCGCTGGGAAACACCATTAGCTACAAGCCTCCAACTAGACTCTGTGCCACTGATCACAACCCTCTGAGCTCTGCCAGCCAGCCAGTTCTTAATCCACTTCACTGTCCAATCATCTATCCCATACTTACAAGACTTACCTACAAGGATGTAATGGGAGACAGTGTCAAAAGCCTTGCTGAAGTCCAACCATACAAACATCCACTGCTTTCCTCCCATCTACTCAGCCAGTCATGACATCATAGAAGGTTAACAGATTGGTAAAGCATGATTTCCCCCGGTGAATTCATATTGACTATTCTTGATGACCTACTTTTCTTCCACTTGCTTGGAGATGACATCGAGAATAAGCTATTCCATCACCTTCCCACAGATGGAGGTGAGGTTGACTGCCTTGTAGCTTCCCTGCTCACTCTTCTTGCCCTTTTTGAAGACGGGAGTGACACTGGCTTTCCTCCAGTTTGCAGGCATATCTCCCTTTCACCGTGACTTCTCAAAGATGATAGAGGGCGGCTTGGCAATCACTTCTGCCAGCTCCATCAGCACTTGTGGGTGCATCCCATTGGAGCCCATGGATTTGTGTGTATCAAGTTTGCATAGACATTCTCTGACCGGATTCCCCTCAACCGAAGGAAATAATTCCTTTCCCCTGACTCTTCCGTAGCATATCCTGCATTGGAAGGGACCCGTAAGGATCCTGAGTCCAACTCCTGGCTCCACACAGAACCACACAAAAATCTGACCATTCATCTGAGAGTGTTGTCCAGATGCTTCTTGAACTCCAGAAAGCTCGGTGTCATGACCGCTTCTCTGGGGAGTCTATTCCAGTGCCCAACTGCCTTCTCAGTGAAGAACCTCCTTCTGATATCCAAATTCTCTCTTACAGCAGGGTCTGGGATTCCTCAGGGGCACTCTCAGCAGTAAAATGACTAACAACATTAATATGACTGTCATAAATTCAGAAAATTCAATTGTTCTGATTAATCATATATGATCAGATACATCTATGTTTAGCAGTAGAGGGTCTTTACTATCAGTTCAAAATTAATACAGTAGTAAATAAGACTGTCCCTTACTTTAGTTGGAGAAGCTTAATTTAGCTTTTTCTGGACTGCTGAATATTGACATTCCACAAACCTCAGTTCTAGTAAATATACTGGACTTTCTAAAATTGTTTTTTAG
Seq C2 exon
GAACAGTTAGAAAATGAGAGCATGAAGTTGAAGCAACTTGAGGACAGAAACAGTGAAAAGGAAAGGAGGCTTATGTCTATTGTTTCCAACCAAGAAGATAAAATACGAACTCTGAAAAACAAATTGAAAGAATTAAGTGACGCCCAAAAGGGTACACAGATGCCAACATACAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131:ENSGALT00000033125:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.780
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(24.3=100),PF0246513=FliD_N=PD(36.1=78.9)
A:
NA
C2:
PF150351=Rootletin=PD(34.9=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]