GgaINT0048895 @ galGal4
Intron Retention
Gene
ENSGALG00000010900 | SPC25
Description
kinetochore protein Spc25 [Source:RefSeq peptide;Acc:NP_001264786]
Coordinates
chr7:18426550-18427411:+
Coord C1 exon
chr7:18426550-18427261
Coord A exon
chr7:18427262-18427345
Coord C2 exon
chr7:18427346-18427411
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGGAGTCTCTTCCCTGCAGAGA
3' ss Score
7.46
Exon sequences
Seq C1 exon
CCGCCCCGACAGGCCCTCGTCGGCGGCAGGAGAAGAGCACGGCGACTACCCCCTCCTCACGGCCATCCATCACGGCACGGCCCTCACGGCAATTCCCATCGCGCCCCGCGGCTCCAGCCTCCAGCAGGAAGGACGGCCGGGCCAATCAACGGCGCGCTTGTTGCGGGGCGGCGCGCGCTGAGCACGCAGCCGTTAGAGAGGCGGGAAGGCGCCGGAGGTTTGAAAGCTGCGGGTGCTGCCGCTGCTAGCAGCTGCGCGCGGGGGGCGGCCCGGCTCGAGCCACAGGAGCGCGGCGGGGCGCAACAGCACCGCGGGGATCTCTGCCGGTAGTATCCCTCACGCCGCGCGGAGCCTTGGGCCAGGATAGCCGCCGCTGCGGCGGCAAAGGAAACCGAGCTACCGCCGTCACTGGTTGGTGACGGAGGCAACGTAAAGGAAAAGGTTAACGACAACTCACGGGGGATAAAAGCAACCCTGAAGCTCTCCCGTTAACGTTGGGTACAGCTGCTGAGGTCGGCTTGCGTCTCGGCACGGTATTCGTTTATACGTTGTGGCATCATGTCTGCTGTAAAGACAGAAGATGAAATAACCGTCGTTGAGAGGGAAATGAAAGAATTTTGGACTGAATTAAAAAGCGTTTATGGCACTGAACAGATCAATCAGACTTTAGCACTGAGAGACTCGTGCAAGGAGTCCATAAACGTACTTTCAG
Seq A exon
GTAAGAGCGCCGTGCGTTCGTGGCGTCCCCGTGTTCTGCACGCTGCTCAGAGCTGGTCAGGTAACTGGAGTCTCTTCCCTGCAG
Seq C2 exon
AGAGATGGTCCAAGAAGCTGAAAGAAGGGGACCTGATGATTGATAAAATTCAGGAGTACAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010900:ENSGALT00000017724:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(26.1=92.3)
A:
NA
C2:
PF083176=Spc7=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATAACCGTCGTTGAGAGG
R:
TCAGGTCCCCTTCTTTCAGCT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]