MmuINT0151192 @ mm9

Intron Retention

Gene

ENSMUSG00000005233 | Spc25

Description

SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913692]

Coordinates

chr2:69042913-69044214:-

Coord C1 exon

chr2:69044121-69044214

Coord A exon

chr2:69042979-69044120

Coord C2 exon

chr2:69042913-69042978

Length

1142 bp

Sequences

Splice sites

5' ss Seq

CAGGTCGGG

5' ss Score

4.74

3' ss Seq

TCTTGTAATTTGTCTTTCAGAAA

3' ss Score

9.67

Exon sequences

Seq C1 exon

AGCAGACCCGGGAGCAGCAGACGGAAGAGCGGCGGGCTGGTTCCTGCCGGACAGGTCCAGTCTGGTGGAGACCGCGGCGTTCCTGGCCGCTCAG

Seq A exon

GTCGGGAGCCGTTTGAAGGGTTGTGGGGCTTCGCCGACCGCACGCCCGGGCTGAGGGAAGCCGGCCTGGGCATGTCGGCGTGGGTCCGCAGAGCCTGGAATGCGGGCGTCCGCTGTTAGCCGCGGAGTTCGGGTCCTGGCGCTGCTCGGTCCCGATCACACTCCCCTCTTCCGCCCTGCAGGGGGAGGAGTGGACGGAGCAGTCGGCCAGGGGTCTGATGCAGAAAACCTGCAGGTCTGTCTGTCCCCCAACCTCTTCGAGTCTCGGTCTCGTTGCCTGCGAGCAGGTCCTTTAGGAGAAGCGGAGTGACACCGGGGTCCTGTTAAAACATGACTTGAAAGCTTCGTGCAACCTTGTTTTGGTCATATTCTTTCCTCTCCTCCACCTCCCTTCATGCCTTCAGAACAGATTGATGCACATCCACCACAGTTAAGCCCAAATTGGCTTGGATCATCCTGTTGCTAACTACCGGACTGTTAGTGGATTATTTTTATCTTATTTTACATTTTATTAGGTTCTGGCCCAATGTTGACCAGGCTATCTTTGAACTCAAATACCTTCCTCTGCCTCTCTGCCTCTCTGCCTCCGATGTGCTGGGACAGTGCTGGGACAAAAGGCGAAAAAAGGCGTTTAGTTCACACCCTGTTGTGTTTATTTAGAAAAGGTCTCTTGTATATCAGACTGGTCCTGACGTTGGCTGACCTTTACCTCAGATTCTCCTGCCCCCAGCTGGAAATGTTGGAATTAAAGTCTGCCTTTATGCTAGCTGAGTTGCTCAATTATTAACCATTCTGTAGCAAAGTCAACCTGCAGACATAAACTCGAAAATGTGGCTTATTTGGTGTCGATAGCAACTAAAATACAGCTTTGTGCTCTGTTTTGCAGTGTCTTAAAACATAATGGGTGAAGACGAATTGGCACTCTTAAATCAAAGCATCAATGAATTTGGGGATAAGTTCAGAAACAGACTCGATGATAATCATAGTCAAGTGCTGGGACTTAGAGACGCCTTCAAGGACTCCATGAAAGCGTTTTCAGGTACTGCCAGCCCTTAACTCCTAACTTGTGGATTTTGCTGACCTTATTTATTTTTTACTGTTATTTCAGCGGGATTCAAATATCTCTTGTAATTTGTCTTTCAG

Seq C2 exon

AAAAGATGTCTTTGAAATTAAAGGAAGAAGAGAGGATGACTGAGATGATTCTGGAGTATAAAAACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000005233-Spc25:NM_025565:1

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=NA C2=0.107

Domain overlap (PFAM):

C1:

PF148171=HAUS5=PU(4.5=15.6),PF083176=Spc7=PU(0.7=3.1)

A:

NA

C2:

PF0149614=V_ATPase_I=FE(10.9=100),PF043367=DUF479=FE(24.7=100),PF101864=Atg14=FE(16.2=100),PF083176=Spc7=FE(12.7=100),PF148171=HAUS5=FE(16.7=100),PF0396210=Mnd1=FE(16.3=100),PF112943=DUF3095=FE(12.0=100)

Main Inclusion Isoform:

ENSMUSP00000120999