GgaINT0049540 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18107400-18108096:-
Coord C1 exon
chr7:18107928-18108096
Coord A exon
chr7:18107581-18107927
Coord C2 exon
chr7:18107400-18107580
Length
347 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
GTTCTATTTTATCTTCCTAGGTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
AAATAGGTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
Seq A exon
GTGATGCAGCAGCAAGACATGATGATAAAAAGCTGTAAATACTTAAATGAAAAGTGAACCAATTTGTCTAACTATATTCCTTTTTGTTTTGTTTTCTAAAGAACCTACAATCAAATAGCAAGGGGAATGTAATGCTTGTTATGTACATTAATACCCTCTACCAACTTAGTGAAACGTGCTGCTCTCACACTGACTTAAAAACACATGAGGAGAATTTTTCTTTTTAATTTTTTAAACTTCTTCCTTGAGAGAAGGAAGTAGAAGCATGGGGAAAATACAGCAATCTACTGACTCCTTTTTAACACAACTATATCAGTGAAGATCTGTGTTCTATTTTATCTTCCTAG
Seq C2 exon
GTCTGTGTTCAAGCCATTCATTTTTGTGCCTGGAATTACTGAGTTATTAAAAACTAGCTCCCCCACATTTGGTCCTGATGACCCAGTCAAGAAGCAACCACGTTTTCAGAGTAAGCCAGATCGAAGACATGAGCTCTATAAAAAACATGAAAGTGCTGCTGTAGTTATGGAAACTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.492
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(13.9=70.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGTGCTATCACTGCTGAAACA
R:
AGTTTCCATAACTACAGCAGCACT
Band lengths:
342-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]