BtaINT0129706 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22410441-22411671:-
Coord C1 exon
chr2:22411509-22411671
Coord A exon
chr2:22410622-22411508
Coord C2 exon
chr2:22410441-22410621
Length
887 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTTAATACGTTTTCTTCTAGATC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GAAACATAACTTTTGAAACAATGGTGGAAATTCTCCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGATTCCAAACTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
Seq A exon
GTAAAGTCACAAATACTATAAACCAGGCAGGGACTGGGGTAGAATCATTAGTCTGGTCATGATTTTGTCAGGCTAAATTTTTGTTGCGCCAATATGACAAAAATTTTCTACTGAATGTTTTATTCAGGTTTTAGTCTGCCATTGCATATTTGTTATATAACTGTTCTCATTCTTATGGGATGAAAATATTTATTGTTTCTGGTACACAGTTATTCCTATCCCCTCTTTCCCCAAATATATTTAAAATTGTCAAGAAAAGAAAGTAGATAGGTTTTTTTATGCAGATTTCCATATTAAATATTAGATGATCAGTAAAATGGTTTAATAATCTAGAAAATACATGTAAAACTTAAAATATCAATAGTTTAAGCTTTATCAAGGAGGATTATACAGGCTATCTTGATTTAAATTGTTGGTATCTCTCATAAAACATAATGCACATTACATTTAGAAATGATCTTATGTTTGCTCTTATCTTTCATCTTACTAAAGATATCATCAAGCAAATGGAAGGAAACTTGTGAACCCTTTATTAATACTTCTGTTTATTTTCATCCCATATCCTAATCCTCAATATTTTGCACTGAGGATTGTTCTTACCCTCCAACTGTGGAGTTTGCATAAAAAATGAACCATAATTTAACTTGACACTGTTTATATGCCAGGCCCTTTGTTAGGTTCATGGGAATTCAAGGCTAAATAAAGCATGTCCCTTGCCCCAAAAGAAGATCCTAGTATACCAAGGAAGATAGGCACAGGCAAAACTAGTATGACAGGAACAATCAGTATGTTATAAATGAGTAGAAACTGGAGGGAATCATAGAAGATTTAGAATAATGCTGAATATTTTTATATCACACATACCAACTTAATACGTTTTCTTCTAG
Seq C2 exon
ATCTGTTTTTAAGCCTTTCATATTTGTGCCGAATATTTCACAACTGTTGAACACCAGTTCACCTACATTTGAACTTGAAGATTCAGTTGGAAAGAAGCTACAATTTAACAGTAAGCCTGACAGAAGACATCCACTCTACCAAAAACATCAACAGGCCTTGGAAATACTAGATAATAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966:ENSBTAT00000017239:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(6.8=32.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATAACTTTTGAAACAATGGTGG
R:
ATCTAGTATTTCCAAGGCCTGTTGA
Band lengths:
334-1221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]