GgaINT1024595 @ galGal4
Intron Retention
Gene
ENSGALG00000014270 | SCRN3
Description
secernin 3 [Source:RefSeq peptide;Acc:NP_001244270]
Coordinates
chr7:16407271-16407967:-
Coord C1 exon
chr7:16407799-16407967
Coord A exon
chr7:16407452-16407798
Coord C2 exon
chr7:16407271-16407451
Length
347 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
GTTCTATTTTATCTTCCTAGGTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
AAATAGGTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
Seq A exon
GTGATGCAGCAGCAAGACATGATGATAAAAAGCTGTAAATACTTAAATGAAAAGTGAACCAATTTGTCTAACTATATTCCTTTTTGTTTTGTTTTCTAAAGAACCTACAATCAAATAGCAAGGGGAATGTAATGCTTGTTATGTACATTAATACCCTCTACCAACTTAGTGAAACGTGCTGCTCTCACACTGACTTAAAAACACATGAGGAGAATTTTTCTTTTTAATTTTTTAAACTTCTTCCTTGAGAGAAGGAAGTAGAAGCATGGGGAAAATACAGCAATCTACTGACTCCTTTTTAACACAACTATATCAGTGAAGATCTGTGTTCTATTTTATCTTCCTAG
Seq C2 exon
GTCTGTGTTCAAGCCATTCATTTTTGTGCCTGGAATTACTGAGTTATTAAAAACTAGCTCCCCCACATTTGGTCCTGATGACCCAGTCAAGAAGCAACCACGTTTTCAGAGTAAGCCAGATCGAAGACATGAGCTCTATAAAAAACATGAAAGTGCTGCTGTAGTTATGGAAACTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.459
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(13.9=70.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGTGCTATCACTGCTGAAACA
R:
AGTTTCCATAACTACAGCAGCACT
Band lengths:
342-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]