GgaINT0049690 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36909981-36912191:-
Coord C1 exon
chr7:36912147-36912191
Coord A exon
chr7:36910185-36912146
Coord C2 exon
chr7:36909981-36910184
Length
1962 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTTTTCCCCTCTATTCCCAGGTG
3' ss Score
11.82
Exon sequences
Seq C1 exon
TACTACATTGAGGAGACAATTGTTGAGGAGGGTGAACCATATGAG
Seq A exon
GTAAAGGTTCCTGTGAAGTTGAATGCGATTGATATATGCATTAATTACATTATACATGTAATTAATGTGTAATACTAAACTAGTGGCCTTTTGCATTCTGAGGATCAGTTTTTCCATAGTAAGCGCATAGGTATCAGTGAACAATTGCTTTCAATATTCTTTATTTCCTCTTCAAGACCTTGTTGTGGGCTGACCAAGAGGACTTCTAGCTTTTTTTTGGGGTGTCTGTCCCATCTGTTTATTAGATTTGCATTTGGGATTCAACCTGGATGTGCAACTACTGTTTGCCACTGCTTTCCATCAGAAGGAGCTGAGGATGTGCCTGACAGAAAAGGACTATGCCGATTTCCATTTCCTAATACCATTTGAGTAAATAATTGAAGACTGCACTTTTGAAGAAAGCCTGTCGTGTTATTTTTAACCGCTGCATTCATCAGGTGTTTTAAATTCCATAGCCAGACTGGATTTAAGGGGAGCAATAGCATGGCTATTTCTTTGTCAGATTTGCCTCAGATTTTGAAAACAGTACTGTGGAGTGAAGAATCACATATGAGTATGGATGTCTTTTTAGCTAACGTGATTGGATGTATTTCCACCAGCTGTAAGTGCAGTCTGTGGCATTAGCATCATGCAGGCCTACGAGTTATCATATGAAGATAAAAGAGAGGGTTGGGTTTTTTTTTGCATTAAATACTGTATTTTCAGAAGGAAGCCTCTCCAAGCTTTAGAAATACAGTACAGCTTCACAGTACAGTACAGTACAGCAAGAAAGTGTGTAGCTTCACTACTTTGTTATAAACCTAACATCAAGTAATGCTTTTCTGAGTCTTGCCTAGGCAGGTTTCAAACTCTGCTGTGCTTTCAGTGCCAGAACTTAAACGAACACTTACTTACTTGAAATGAGTTGTAAGAGATTAATCTGTTGTGGTGCAGAAGTAACTATTAACATCCTGACACGTCATTAGTGAAATGTAGTTAATGTTCACATAATAAACAACCTTTTTGTAATTTAAGTTTTGTGTATCTGCCAAGTTAATATTTAATGCTTGGTGTATTTTCTAGTCTACCTCATACTAATGTAAGTAACTATCGGAAATCTGACCTTTATGCATTCCTTTTTAAAGCCTTTGTTCTATTTAAGCTAATTGGTTATGAAATAAAGCTTGATACTTTGTTGTTCAGATAATTTCAGAGCCTATTTTTCAGCTGTAATCATTGTTTTAACATGCTTTGGATTAGAATCTTATTATTAAAATTATCTCTTACAGCATGAATATGTTGATAAAAAAGTATATGAATGATTTAAATTAATTGTGGTCTTCTTTCCTGTGGATGCTTGATCAAATGAATGTCTGTATGTCTCAACTGTATCTTTGTCATAACTCTGATCTGACTATGAGAAAATCTACATTAGTAGCAAAGGTGGATTCCGGGCATTTGTTCAATCTGTGCATCACAGATTTGCCACAGGATCCTGAAGACTTGGGATCTGCTGTGTGCATTTCTTTCACAAGAAGAAGATAATCAAGACTGTGTGCACCTCTGACTTGCTTTCTCAGTTTCCATTATCGTCGTTAGGAAACCTGGCTGTGATGTCTGCATCTTCAACACTGAGAGCGCTTTTCATGCTTTGGTTTTGGTTGTGGGTGGTCACATCGGAGAAACCACTTCATGTGCATATGGAGCACAGTCCCCACTCTTCCTGCTCCTTTGGAGAATAATTGTATCAGTTCGATGCAGAAATCAGCCAGTTGCTTAATTCCTTGTACTTTTTCAGTTTGAGTCATATAAAGCAGGCATTACTGGGTAACCCCAGTAGGAAGTAAGTGTCACCATTTTTCTACACTATAGGTGGTTCGGGGATAAGAACTGAGCATCTTTCTGTATCAGAGGAAGTGGAAAAAGCTTACAATAAAATGGTGATGTATAATTAAAACACTTTTTTTTCCCCTCTATTCCCAG
Seq C2 exon
GTGGTCACTGAGATCACTGACAGCACTAGCACAGAATTCACAGGTCCTACAACCATCACCCGTACGATTGAGTATGAAAAAACTTCTGGTGAGGGTGCAGCAACTCCAGTCAGGAAGAAGACGATACGGACAAAAATGGACACTTCCAAGTTCTTGACACCTTACCTGCAGCACAGTAATAAAATGAAGGACCTGTTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0088013=Nebulin=PU(53.6=22.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTGAGGAGACAATTGTTGAGGA
R:
CTCACTGAACAGGTCCTTCAT
Band lengths:
246-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]