GgaINT0049733 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36881990-36882302:-
Coord C1 exon
chr7:36882198-36882302
Coord A exon
chr7:36882098-36882197
Coord C2 exon
chr7:36881990-36882097
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AATGCTTGCTTACCTTTCAGAAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
CGCTCGTACATAGCAGCCTGGGAGAAAGACAAAACCAGCATTCATATTATGCCAGATACCCCTGGTATTTTGCTGGCGCAGCAGAACAAAGTGAACTACAGCGAG
Seq A exon
GTAGGTGGTTTGTCTGGGCTTTGGAGTCCAGTTCTGGACGGAGACGATCCAGGCAGAAGTGCTGTTTGTTTCACGTGGGGAATGCTTGCTTACCTTTCAG
Seq C2 exon
AAAATGTACCGGCTGGCGATGGAGGAAGACAAGAAAAAGGGCTATGACCTGCGTGCAGATGCCATTCCCATCAAGGCTGCAAAAGCTTCCAGGGATATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCGTACATAGCAGCCTG
R:
ACTGGCAATATCCCTGGAAGC
Band lengths:
210-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]