HsaINT0112199 @ hg19
Intron Retention
Gene
ENSG00000183091 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:7720]
Coordinates
chr2:152499088-152499383:-
Coord C1 exon
chr2:152499279-152499383
Coord A exon
chr2:152499196-152499278
Coord C2 exon
chr2:152499088-152499195
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACTATTAATGTCTATTTTAGAAA
3' ss Score
8.25
Exon sequences
Seq C1 exon
CGCCTCTATACAGAAGCTTGGGATAAAGATAAAACCACTGTCCACATTATGCCAGATACCCCTGAAGTTTTATTAGCTAAACAAAACAAAGTAAATTACAGTGAG
Seq A exon
GTAAGTAATATATTCATAGTGCGTGATACATTTTCCTTACAATGCACTTTATAAATCCAACTTACTATTAATGTCTATTTTAG
Seq C2 exon
AAATTGTATAAGCTTGGCCTAGAAGAAGCCAAGAGGAAAGGTTATGACATGCGGGTAGATGCCATTCCTATCAAGGCAGCCAAGGCCTCCAGAGATATTGCAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183091-NEB:NM_001164508:59
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCTATACAGAAGCTTGGG
R:
TAGGAATGGCATCTACCCGCA
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)