GgaINT0049797 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34709386-34711371:-
Coord C1 exon
chr7:34711267-34711371
Coord A exon
chr7:34709491-34711266
Coord C2 exon
chr7:34709386-34709490
Length
1776 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTCTCTTTGCCAATCACCAGGTT
3' ss Score
6.24
Exon sequences
Seq C1 exon
AACAGTTATAAATCCCTTGCCAAGATGCTCCTGAAACAAGGGTGCAATGAAATTCTGAGGCCAGATATCCTGACAGCACTCTACAACTCATACTTATGGAGCCAG
Seq A exon
GTAATGCGAAGAACTGCTGCTGTAGGAGACATTAGTACTACAATTTAGCTGCTTGGTCTTTTAATGCTTGTGAGTTCTCTGAGCTTCCACAGATATCAGACTCCGAAGTTTTGTCCATGTGCAGAACGCTATGTCTATGATTTGTCTATGATAAAATAGTTTAAAACCCAAACTATCTGAAAAAGCATTTACTGGGGCTTGAACTTCACCTAGCTTAGGCTGATGTTCCTTCCTTTTCTTCCTTTCATACTTACATAAAGAGCAATTTTCTATGCATTAAAGATCATAGAATCATAGCATGGTTGGGTTGGAAGAGACCTCAGAGCCTCTGCAGCCCCAGCCCTGCCATGTGCTGACTGCCCCCCAGCTCAGGCTGCCCAGGGCCCATCCACAGCCTGGGGCACCTCCAGGGATGGCGCACCACCGCTCTGGGCAGTGCCACGGCCTCATAACCCTCTTAAATAAGGCTAGCATACCAGCCCTCATGCAGTCACATGCTAAAAGTTTATAAACAAAAATATTCTCTCCTTTCATCTTTTGTAAGAGTTGAAAGTAGAGTATGATTCATCTGCTCATACAGAAAAAGAACCTTTGGTAACATTTTTGATAATATAAAAGAAGGCCTTTAAATGATTCTAATGTTATTATGAAGAAGTAATTTTCTGTATTCTGTCTGTTTAATCTGGATTCCTACACAACTGGAATTTGTTGCAACAGTTGGATAAAAAGGTGATTCATTGAGTAACTGGTACATATTTATATTTGCTCAGAAATGAGATCTGCTAGCAGTAACCTTGCTATTTTCAATGGCAAGCACGTTTCCTGACTGGGCTAGATTAAATTGGCATTTAATGTATAAATTATACACTGGAAATGCAACAATAGAAACCAATTACATGACAGTGAGAGAGACGCCACTACAGACACAGTTTAAAAAGTCCATTACTATTATAGAACCAAAGGCTGTTACTAGACATTTTTATCCAATTGATCAGTGGGTATCTATTTATTACCTCATTAAAAACTCCTTGCAGGTAAGCTTGAGTGTGTTTGAAGGATAGAAATAGCACTCTGCCTGACCTGGATGTTCATCTGAGTGGGCGTTATCTTTTGATTTGTTGTTTGTATATAATTATTGATATTTTGTCAGTCCTGTTTAAAAGCATGCTTTTATTTTCTGATGCAAGATAAAGCATGAAAATTCCTTTTTAAACATATATGTTCCAACCTCTTCCACCTGCCCTGAGGCTATCTACACTGGATTGCCATTCTTGAGATAGTCTGTTCTCATTGAATTCTCTGAAAACTGTTCAGAGTCCTCAGTAAGACCAGATAATCTCTAAGACATTATTAAGATACAGATTCTGCTGTCAATGACTTTAAAGTAGGCTGGCATTATGATGGTTCAACAGATGCTATTATCTTCTGTTGTGTAAGATGTTTTACATTTCTCTTTGTTCTGATGAATAGTTTAAAATCAGATCTCATCCCATTATGAATTTAAAAAATCGCTGTTCTGCTGAGGTTGCTTTATTAACTCAGTCATGGACACAGAAGTGAAGTTTTATGATTCAGTGAAAGAAATATAGAATAATCATGCAAATAGCCCCTAGGGCAGATAAGAGATTTGCAGAGTTTGGTTTGTTTTGCATGTTCAGTTTTCATTGGCTTTGGTGAAAGGATTTTGCAATTTCTTGTGTGAATACAAACGTGCATCTTCTGGAGCAGTTTTGTCTTGGTTTGTGTGGTTGACATAGTCTCTTTGCCAATCACCAG
Seq C2 exon
GTTGAGTACAAAAAGGACTATGAGAAGAAGAAAGATAAGTATACCACAGTTGTGGATACTCCAGAAAACATAAGGACTGCAAAAGTCAACAAACAGATTAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(53.6=42.9)
A:
NA
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTATAAATCCCTTGCCAAGATGC
R:
CGCTAATCTGTTTGTTGACTTTTGC
Band lengths:
206-1982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]