RnoINT0099939 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37696590-37698939:-
Coord C1 exon
chr3:37698835-37698939
Coord A exon
chr3:37696695-37698834
Coord C2 exon
chr3:37696590-37696694
Length
2140 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TCCTTTCCTCCGTGATTTAGATC
3' ss Score
9.11
Exon sequences
Seq C1 exon
AAAAAATACAGAGCTGATTATGAGCAGCGGAAAGATAAATACCACCTGGTAGTCGATGAACCTAGACATCTGCTGGCTAAGACGGCAGGCGACCAGATCAGCCAG
Seq A exon
GTATTGTGATGAGGCCGGCAGCTTGGCCCAGACAGGACTGTGCTCCGATTTCTCCCAAGGTGTCGTCCCGTCTGCTGCAAGGATGTCATAGGTTCCACCTATGATATTGGACTGTTCTGTTTCAAAATATCTGTCTAGCCACCCAAAGAGCCCGTGAGCTGTTTGAGTGTGCCAGTCAACGCTCTGTGTCCTCACTTGTGCCGTGGTGAAGGTGAAAACAGAAGCTGAGGGCCCCCCTCCATTCTCTTCTTCTGCAGTACCCGTTTTGTTAACAGCAGCGGTAAACTGCAGATGGAGTTGTTAAAAACTAATTTTTAAAGTTATGGGAGAAAAAAGACAGAGGAGATCCCTACCCTACTCTTCTGTTCTGATGATGTCCTCTCCATAAGGCAATCAGGGTGGTGACATACATACTGTTTACCTCTGTCCTACCCATTTGCGAGGGTCGTGGAGGGTCAAAGCCTAAATATTTCCGGCCATTCTCCTTGCGCTCCACACGGGGGCTTCACCACACAGCTCTGTGAGTACGCAAAGTGTGTTAAGCCTACATCTCTTCACTCGGAGGTGACTGGGATATAGAGCCATGTTCTTTCTGTCTTCATGAGTCTCTCTTGTGCTTCACTGCTCTTTGCATGGACAGAGAAAATATAAGTCTAGTGCCAAGATGCTTCTGAAACAAGGCTGTAATGAGATCCTGCGTCCAGATATGTTGACTGCTCTCTACAATACACACATGTGGAGCCAGGTAATGTCCAACAGGGTGTGAAGAAGCAGGCTTAGACCTTCGGCGCAGCGCCTTCTATGCTCTCTTTGGTCCCCTGACCTCTGCCCCTGCTGCTTCCTCATGATAAAGCATATGAATGTTCATTCCTTAGAAGTAAAATTTGATCATGGCTGGGTATACTGGGCAGCCATTGTCTGCACATCTAAGGCTCAGAAATCCTCGAAGGTCAGCAGAGTCTCCATGCATTTTTTTTTCAAATTGATAGATATAACATTTACTTAATTTTTTTTTAGTGTTTGCTTTGAAAGGCAGATTGCTTAGAAATTAAGGTTCTTCAGTAGATTAGTGGCTTTCAAAGGTCCGAATATTTAATGTTTTCTTCCAATTGCCCCATTGCTCAGCTCTCACTGCAACTGTTTCAGAGAGCTGGGGCTAGCCACGTAGGCCCTGGACATTGGCAATATTCACGTCAGTAACGTTGTCACCCAGTGAGGTCCACTGAGCATGCACTGCCACCTTTCTCACAGACCGGAAGGCAAATGTGGTAACTCAGTTACCCACACGAACGTTAATGAAATGCCACTGCCTTGGCCCAAGCCAAAAGGGCTCCAGCCAATCTTTCCTGTTAGCAGATTGCTTTGTAATCTTAGTTTGTTGTCAAGTCAATATTTATGAAAAGGGATATGTCCTCACATAAATATCCTTGTCCTTGATAGGATCATCCAAACACTATGCATGAAAGTTTGTTGGTCTCTGTATCTGTCCTGCTTTAAACAGCTTATCTGCATGACAAACAAAACAAAAAAAATGGGACTTGGAAATTTCCAATAAAAAATTCATTTTGGATGTGGGGGAGAGGGAAGGTGGGAGGACTGGGAGGAGTGGAGGGGGAGGCTACAATTGGAATGTATTATATGAGAGAAGGATAAATGAGTAGAGAGATCACAGATAGATGGGTGGGTGGGTTGGTGGGTGGGTGAGTAGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGATAGATGATAGATTAAAAATCTAAAATACTTTAAAAGTCATATATACTCATTTTATTGGACATAGAAAAATACCAATGTAAAATGGAATGTTAGAGTGAGGTTGTCAGTTCAGAGAAGAGTCTAGCCTTCCTCTGAGATTTACTATACACATGCCCTTGGCTCAGGTTCCTAACCTCTGAGAGCCCCTTTGCTTCCGTGTCTATGAAATACATTGGAAAGCGTCTGTCCATGCTACTACATTACGGCAATGAAATGCAAACGTTAGTAAACACCTCCAGTGAGCGAAGGCAGAAGCCACCCTCTGATATTGCATGAGATTTCTTTAGGACTTCTGTTCTGGAATGTAACTTGTCCTTTCCTCCGTGATTTAG
Seq C2 exon
ATCAAATACAGGAAAAAGTATGAGAAGTCAAAGGACAAATTCACCTCCGTTGTGGACACCCCGGAGCACCTGCGCACCACAAAAGTCAACAAGCAAATCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]