GgaINT0049809 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34698277-34700692:-
Coord C1 exon
chr7:34700588-34700692
Coord A exon
chr7:34698382-34700587
Coord C2 exon
chr7:34698277-34698381
Length
2206 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
3' ss Seq
CTGTTTTCCTTTCTTCTTAGGTG
3' ss Score
12.02
Exon sequences
Seq C1 exon
GTGAAATACAAAGCAGATCTAAAGAAACTTCATAAGCCTGTCACAGACATGTCTGAGTCGCTGATCATGAACCATGTCCTGAATACAAGCCAACTTGCCAGTGCT
Seq A exon
GTAAGCTCATTAACTAACCCCAGATCCATTTGACTTTTCCATTCCTACTGATCCAGCCTGAACTGATCTCTGCTAATTATTTCTGTAATGATTACTCCCTTTGTTATAGTTCATGGGCCATCACTTGGTAGTGATCTCTTCTCTACTTTCTAACGGTTGTTTCCTAGTGAACTAGCAACTTTCTCACATTTGCCTTCTGGAAGTGAAATCTTCATTAGCTGTAGAGCTGCTAGTATTTTAAATCCACTAATCGTTTTCAGTGGATTCCTTCTTTATTACATTTTAACTGAGCTCATCTCACTAATACTATTTTCTTATTTCTTTTTTATTTTTTCTTCATTGTTTACTATATTTAAAACTTTTTTTCTTCTGCTTTTTCATTTCATTTTTATGTTTAACATCCTCCTACTGTAGAGGTACAGAACTACTTCTAACAAAACACTTGAAAATTTTATTGAGAAAATATGAAAATCATTACTGCCTGGCACAATCTTTTTAGGTATCCACTGTGTTTCCTTTCTCTTTTTTGTTTACTTTTTGTCTTCCTTTTTTTTTTTTCATTTCTGGTTTTGAAAAAAAATCTTTGCTGCAATCCAAGTGATCAAAAAAGATAACTCACGTCTTTAAAAATGATATGATACTGAGAGTTAAGCTTCTTGTTTTTGTTTTGCTTTTTGTATTTCTAATTTCTCTTTGATGTTCCATTGAAGTGTTGCTTTGATTGGACCTAAGAAGTAGATTTGCTGAGGGATTTTTTTTTATTGAGATGATTTTTGACACCTTCCCCTTCAGTACCAGTACAAGAAGCAATATGAGAAGAGTAAGGGTCACTACCATATGGTGCCAGATAATCTTGAACAGGTTCATCTAAGGGAGGCATCAGAACTACAGAGCCACGTAAGTTGGTCACGTGTTTCTCATTAACCATACTCATTGAGTTCTGAAGTCTCCATCACTGAAACCAGCCTAGCAAGTTCACTGATGTATAGAAATTTGTGCCAATCTGCTTTTTGAACACTGCATGCTTGAGAGGACAAAAGTCAATGAGAAATGTTTGTACATTTGCAAGTTTAGAACACATACAAAATAGCCACGAGTTCTTCATTTTAGAGTAGACCTCAAAATCACTTATTCATGTTGTATCTGGATATTGCTACACAGTAATATAATTACTGTATTATACTCAGTATAATACCTTTACCTGGGGGATTTCATCTATACAAAAATAGACCTGATAATCTCAGAAACTGGAAATTGAAATAAAATATTGTTACTGTGAGCAAATTTCAGTTGCTTTGTCCATCCTAGTCTCAAGTGATACAAAGGAGAACTCTGCCATTCTTTTTCTGCACGCATAATTCCTTTTAATGAAAACAATACCTACTGCTGCTCTTAGAAATGTCTGTTGACACTTTTTCCCTCAAATGAGGACATTTATCCTCAGATTTGGTCTCTTAATCCTCCTTATTCCAGGTACTTATTGGCCCTAAAGCAAGAGAAAAGTTACTACTAGCACATGAAGGGATTGTGTTCTGCTGCAGAAAAATGGCACAGAACTGTAAAAACTGCATAGTAGATGACTACAAGAAAATGACTGTTCATCAGTTTTTAGTGTAGTCCGAATGTAGTGGAAGAGCCAACCACTTGTTGCTCTAGTGTGAGACTGAGATTGGTCTGAGCCAAAGACAGAGCATTGCCTCGTGCAGTAGTTTGATGCACTAAAGACTGGATACTGTAAGGTGAAGCAGAAATATATTAATTGTGGTGGACATTTTACTCAGTGGATACACATGCACAGAATTAGACAAGAAGATGCTGAGTTGTGTCTTCTCAAGCCCTCCCACTAACAATACAGCAATTTATTAACATGGCTGAACTCCACCATTGTCAGGAACAGTTTGAGTGCTTTTAGGTTAGATTTGTACAGTTCCTGTCTTCCTTCTTGTTATTTCTTGAAATCAGAGCTGATGCTGGTTGTTCTCTGCAACAGGAAATATGTCACTAGAATTTTATGCCATACACACTGTGCTGCAAGGCTGACCTTTGATTTTACATTTTGAGGTCAATAATACATATTTCAGGAAGATGATTGGTGTCAGAAGTTCATTTTTTACAAGAGATCAGTTGATCACAGTAGAGCATATACTAGCTGAAGAGTTAAGTTATTTGATTATTTTGAAGGGTAACTGTTTTCCTTTCTTCTTAG
Seq C2 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]